PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P16680_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 233aa MW: 25701.1 Da PI: 7.422 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.2 | 4e-33 | 62 | 117 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v+Y+eC kNhAas+Gg a+DGCgEfmps geegt++alkC+ACgCHRnFHR+e+e GSMUA_Achr3P16680_001 62 VVKYRECHKNHAASIGGSATDGCGEFMPS-GEEGTPEALKCSACGCHRNFHRKETEG 117 589*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.3E-30 | 63 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.2E-30 | 64 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.838 | 65 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-21 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.53E-19 | 154 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-30 | 161 | 224 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.1E-26 | 165 | 221 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDVSGREEEM PTPMASACVG DHGHNSSIHD TPPIHHSTNG PLPPLSIVTT EDHHHHGKKG 60 VVVKYRECHK NHAASIGGSA TDGCGEFMPS GEEGTPEALK CSACGCHRNF HRKETEGEPS 120 YAFGYSPASN SLVPRVVMPL GAMQTSESDE MEGVGGMVPM PAMVKKRFRT RFTTEQKEKM 180 LSFAEKVGWR LQKQEESVVQ QFCQETGVKR RVLKVWMHNN KHNLAGKISL QLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-25 | 164 | 223 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392577.1 | 1e-167 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | O64722 | 2e-65 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | M0SF84 | 1e-174 | M0SF84_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P16680_001 | 1e-174 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 4e-65 | homeobox protein 21 |
Publications ? help Back to Top | |||
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