PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P16490_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 168aa MW: 19089.7 Da PI: 11.2865 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.8e-18 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ GSMUA_Achr3P16490_001 20 RGHWRPGEDEKLRQLVEQFGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 65 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59.1 | 9.5e-19 | 73 | 114 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ GSMUA_Achr3P16490_001 73 RPFTDEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWH 114 69*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.821 | 15 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 19 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-29 | 19 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-17 | 20 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 21 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-12 | 23 | 64 | No hit | No description |
PROSITE profile | PS51294 | 20.152 | 71 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 72 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 74 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-12 | 74 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MGSSSKSAGG SDEGRRACLR GHWRPGEDEK LRQLVEQFGP QNWNSIAEKL QGRSGKSCRL 60 RWFNQLDPRI NKRPFTDEEE ERLLAAHRIH GNKWALIARL FPGRTDNAVK NHWHLRFRVP 120 RADFWNLPLL TKTSAILAPL NPPGGTGLYG ASNIYRALNT LSQVRTLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-31 | 19 | 113 | 6 | 100 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM901569 | 3e-63 | AM901569.1 Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone rGyLTR7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392543.1 | 1e-71 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | Q6R0C4 | 2e-59 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | M0SF65 | 1e-120 | M0SF65_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P16490_001 | 1e-121 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 8e-62 | myb domain protein 52 |
Publications ? help Back to Top | |||
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