PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P15840_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 249aa MW: 27692.1 Da PI: 8.92 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.5 | 2.7e-28 | 110 | 170 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +dDgy+WrKYGqK++ g+++pr+YYrCt++ gCp+ k+v+rs+edp ++++tY+g H++ GSMUA_Achr3P15840_001 110 VDDGYSWRKYGQKDILGAKHPRGYYRCTHRvaqGCPAMKQVQRSDEDPLLFHVTYHGMHTC 170 59***************************9999**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-28 | 107 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-26 | 109 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-39 | 110 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.917 | 111 | 168 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 111 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEKDQCLLLA ELARARKLVG QMEAELHRHS ANESCKALLR ELFASIEKSI CMAKTSRPDS 60 SRPSSGESSQ SDPSKPGFKD HTPKKRKTLP KWTSEVRVSS AAGGVFEGPV DDGYSWRKYG 120 QKDILGAKHP RGYYRCTHRV AQGCPAMKQV QRSDEDPLLF HVTYHGMHTC LRKQGQKQRR 180 PKEDEHQTGL RNCFSSSTSP TFQSPAASDS TFFSLSRCVF EDGIKLWSPE SEVTEMVSGA 240 NSAANPPAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-20 | 110 | 170 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392464.1 | 1e-169 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | M0SF00 | 0.0 | M0SF00_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P15840_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-36 | WRKY family protein |