PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P15740_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 276aa MW: 31593.8 Da PI: 10.4596

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P15740_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.6	4.1e-33	18	110	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F+ k+y++++d++l++li+w +++nsf+v+d+++f++ +Lp++Fkh+nf+ F+RQLn+YgF+kv+ ++ weF+h+sF +g GSMUA_Achr3P15740_001 18 FVAKTYQMVSDQRLDSLIRWGNQNNSFLVVDPNDFSQLLLPSFFKHRNFSTFIRQLNTYGFRKVDPDR---------WEFAHESFLRG 96 9**************************************************************999.........******* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 + +ll +i r++++ GSMUA_Achr3P15740_001 97 QAHLLPSITRRRRK 110 ********9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.3E-49	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.12E-32	15	107	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.3E-35	15	107	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.3E-15	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.4E-29	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-15	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-15	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEEKSRGCHD YQEPVAPFVA KTYQMVSDQR LDSLIRWGNQ NNSFLVVDPN DFSQLLLPSF 60 FKHRNFSTFI RQLNTYGFRK VDPDRWEFAH ESFLRGQAHL LPSITRRRRK TQGVLHGSSS 120 RGRGGVDGEE ERLLLQELEK LQQQQRSLEE EVKAMSKRVQ ATERRPRQLM SFLVKVAEDP 180 KLLLQRLVRS KQQQQLSTEK KRRVFASPAT TLLPFDEVSA MLKPSRTEPK PLEVGGFDLS 240 ARQTSSQPEF GLSGTSSGTA SSTVAFPFTL LDQGFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-21	15	107	26	129	Heat shock factor protein 1
5d5v_B	4e-21	15	107	26	129	Heat shock factor protein 1
5d5v_D	4e-21	15	107	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392455.1	0.0	PREDICTED: heat stress transcription factor C-1-like
Swissprot	Q9LV52	4e-71	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	M0SEZ0	0.0	M0SEZ0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P15740_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11298	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	2e-59	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]