PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P15690_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 27463.8 Da PI: 7.5001 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.5 | 5.7e-28 | 60 | 117 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs++prsYYrC+s gCp++k+ve+s+ dp+ +++tY+ +Hnh GSMUA_Achr3P15690_001 60 SDSWSWRKYGQKPIKGSPYPRSYYRCSSCkGCPARKQVECSRLDPTKLIVTYSFDHNH 117 69************************9988**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 29 | No hit | No description |
SuperFamily | SSF118290 | 3.01E-24 | 55 | 118 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-29 | 55 | 118 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-32 | 59 | 119 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.195 | 60 | 120 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 61 | 117 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDAWKPEEDR GGDRELKPTP PLASSSSSCS KRSQLPVQKR VVSVTVGSKP LHAGEAFPPS 60 DSWSWRKYGQ KPIKGSPYPR SYYRCSSCKG CPARKQVECS RLDPTKLIVT YSFDHNHLCP 120 LPRNGSHHQN RLPPPAPPPI EEPAPPAQSG FRPLESTPEQ EAKYPVVIGK NEPLQLVDGG 180 RLPWFSDVAS ASTTSAGSDE LLYGSLHFGS DAATGSMAGE REAGLGEESL FAGLGELPEY 240 SVVLRWGLTS GHTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-16 | 60 | 120 | 15 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392499.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 | ||||
TrEMBL | M0SEY5 | 0.0 | M0SEY5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P15690_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7088 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 7e-31 | WRKY DNA-binding protein 65 |