PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P15640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 453aa MW: 51439.4 Da PI: 4.6562 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.3 | 1.6e-35 | 16 | 106 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+ye+++d+++++++sws ++ sfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+k++ ++ weF+++ F +g GSMUA_Achr3P15640_001 16 FLTKTYEMVDDPATNSIVSWSPTNLSFVVWNQLEFARDLLPKYFKHSNFSSFVRQLNTYGFRKIDPDQ---------WEFANEDFIRG 94 9********************999*****************************************999.........*********** PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k+ll++i+r+k GSMUA_Achr3P15640_001 95 EKHLLKNIHRRK 106 **********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.9E-39 | 7 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.35E-35 | 11 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.8E-63 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.3E-31 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-20 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-20 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-20 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MESPRGSSSS SSPPPFLTKT YEMVDDPATN SIVSWSPTNL SFVVWNQLEF ARDLLPKYFK 60 HSNFSSFVRQ LNTYGFRKID PDQWEFANED FIRGEKHLLK NIHRRKPVYS HSPHNQGSSS 120 GPLSEAQKQD LEEEIERLKQ EKAMLVNELQ KNVHKQHGME HQMQSLEERL QVLGDRHRNL 180 MAFLTQIVQE PWFLSNLVQD SDLLSKKRRL PKINYFNEDT AMEDNQIVTF QQPLAGEKSG 240 YASIQIFDME PFEKMESSLN SLENFFRGVS QTSGDDMCYD SIVACLPTDV LLTEMNASSV 300 ETGASLQSLL PNLYPSSPCL GDIHSSPETA ECMSHVETPG IPAAENQTDS RIKVAEIDVN 360 LEPAATEVDS LRDQATSTTT STMPTGVNDV FWEQFLTEIP DSSVTKVVQL KRRDSDDEQS 420 EGKIREVENM CRNRINVDHF VEKMANLTSV EKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-27 | 6 | 105 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-27 | 6 | 105 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-27 | 6 | 105 | 19 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392447.1 | 0.0 | PREDICTED: heat stress transcription factor A-4b-like isoform X2 | ||||
Swissprot | Q94J16 | 1e-142 | HFA4B_ORYSJ; Heat stress transcription factor A-4b | ||||
TrEMBL | M0SEY0 | 0.0 | M0SEY0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P15640_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3296 | 37 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 4e-76 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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