PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P15640_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 453aa    MW: 51439.4 Da    PI: 4.6562
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P15640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35161062101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+ye+++d+++++++sws ++ sfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F +g
  GSMUA_Achr3P15640_001  16 FLTKTYEMVDDPATNSIVSWSPTNLSFVVWNQLEFARDLLPKYFKHSNFSSFVRQLNTYGFRKIDPDQ---------WEFANEDFIRG 94 
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +k+ll++i+r+k
  GSMUA_Achr3P15640_001  95 EKHLLKNIHRRK 106
                            **********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.9E-397100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-6312105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MESPRGSSSS SSPPPFLTKT YEMVDDPATN SIVSWSPTNL SFVVWNQLEF ARDLLPKYFK  60
HSNFSSFVRQ LNTYGFRKID PDQWEFANED FIRGEKHLLK NIHRRKPVYS HSPHNQGSSS  120
GPLSEAQKQD LEEEIERLKQ EKAMLVNELQ KNVHKQHGME HQMQSLEERL QVLGDRHRNL  180
MAFLTQIVQE PWFLSNLVQD SDLLSKKRRL PKINYFNEDT AMEDNQIVTF QQPLAGEKSG  240
YASIQIFDME PFEKMESSLN SLENFFRGVS QTSGDDMCYD SIVACLPTDV LLTEMNASSV  300
ETGASLQSLL PNLYPSSPCL GDIHSSPETA ECMSHVETPG IPAAENQTDS RIKVAEIDVN  360
LEPAATEVDS LRDQATSTTT STMPTGVNDV FWEQFLTEIP DSSVTKVVQL KRRDSDDEQS  420
EGKIREVENM CRNRINVDHF VEKMANLTSV EKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-27610519129Heat shock factor protein 1
5d5v_B2e-27610519129Heat shock factor protein 1
5d5v_D2e-27610519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392447.10.0PREDICTED: heat stress transcription factor A-4b-like isoform X2
SwissprotQ94J161e-142HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLM0SEY00.0M0SEY0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P15640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-76heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]