PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P14840_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 283aa MW: 31763.3 Da PI: 5.9228

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P14840_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.4e-20	109	169	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F++ n ps+++++e++ +l +++e++V++WFqNr+a+ k+ GSMUA_Achr3P14840_001 109 RQRWTPTTVQLQILEAMFNQdNGMPSKQKIKEITIELsqhgQISESNVTNWFQNRKARSKR 169 89***************99************************************97 PP
2	Wus_type_Homeobox	90.2	2e-29	109	171	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPt+ Q++iLe+++++ P+k++i++it eL+++G+i++ NV +WFQNrkaR+++kq GSMUA_Achr3P14840_001 109 RQRWTPTTVQLQILEAMFNQDNGMPSKQKIKEITIELSQHGQISESNVTNWFQNRKARSKRKQ 171 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-15	102	174	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.268	105	170	IPR001356	Homeobox domain
SMART	SM00389	1.2E-13	107	174	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.99E-17	107	173	IPR009057	Homeodomain-like
Pfam	PF00046	5.3E-18	109	169	IPR001356	Homeobox domain
CDD	cd00086	8.54E-13	109	171	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MQWEKPSGGG GDDERNDDVR EGRGRGVGEA GAEGEGVGEG ILCVKVMTDE QMEVLRRQIA 60 VYSTICEKLV EMHKAITAHH DSLAALGMRV GGIYNDPLMA SGNNKITGRQ RWTPTTVQLQ 120 ILEAMFNQDN GMPSKQKIKE ITIELSQHGQ ISESNVTNWF QNRKARSKRK QMAALPSNTE 180 SETLNEKKPK PNQNHHDDLP ISSDNNPIRD MQINTEIHSL EWEPNQAHGI HLSNDSSKAS 240 SGSGHTTFYD NILSTPRYDH LMEKFDVRYF SPYHAEESYD IMG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392322.1	0.0	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	4e-74	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0SEQ0	0.0	M0SEQ0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P14840_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-60	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]