PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P14500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 290aa    MW: 31828 Da    PI: 7.9053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P14500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000241812181254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ ++++ L++l+ +      +K + a++L +A+ YIk L
  GSMUA_Achr3P14500_001 181 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFL 218
                            7788899*********998.....8****************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.195169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-10179230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-4179223No hitNo description
Gene3DG3DSA:4.10.280.109.8E-8183226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNQLPAHQLN VAKVKELSEN SFPTLNLDHQ LHQKLLARAL ASDRQIDGLQ PLLGHLSESS  60
SFAPPTANFS RSSPHPPLVA GSLDMDLHEL DLLASARLGR SFCQTTLTGM ALFGEDATSA  120
LDHLQESVLP GPFHHHHLKV ASGVAEARRC NSTWEDKSSQ TPPRKPRFEQ QRSSFSPFKV  180
RKEKLGDRIA ALQQLVAPFG KTDTASVLME AIGYIKFLLD QVEKLSVPYM RSCGSKRSRT  240
MEEASNGESD EPRRDLRSRG LCLVPLSCTS YVTTEQGVWS PVPSSCTGSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392306.20.0PREDICTED: transcription factor bHLH110-like isoform X2
TrEMBLM0SEL70.0M0SEL7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P14500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-45bHLH family protein