PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P13920_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 285aa    MW: 31873.8 Da    PI: 6.5227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P13920_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-14130174347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+ l++ + + +G g+Wk Ia+++ ++Rt+ q+ s+ qky
  GSMUA_Achr3P13920_001 130 NWTEEEHRLFLMGLNVYGRGDWKNIAKYFVTTRTPTQVASHAQKY 174
                            8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.064555IPR017877Myb-like domain
SMARTSM007179.6557IPR001005SANT/Myb domain
PROSITE profilePS5129417.394123179IPR017930Myb domain
SuperFamilySSF466897.59E-18125179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-12127176IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-16127177IPR006447Myb domain, plants
SMARTSM007172.9E-13127177IPR001005SANT/Myb domain
CDDcd001672.57E-11130175No hitNo description
PfamPF002492.0E-12130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSFSKNGDWT FLENNTFENA LAELNLDGPD WLEQLTEILP SKTIDQVRDH YIDLVMDIDL  60
IESGRYMEHQ YTDSEKNKMD GDLEFPLPAV HGSGTSSSEA MDQTAGVVLV PGGTRRLLRV  120
AEPASRKGVN WTEEEHRLFL MGLNVYGRGD WKNIAKYFVT TRTPTQVASH AQKYFNRMEH  180
ARKVGKRRPS IHDIRNITAP LRTEAQIMSI YDLVDRKKPF VVGHGYQLRP RASPPLLSSI  240
SAAAVEREAG AAPASSLDTG QPSLIPEQSN TMGTTDPTSW SKKSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0SEF90.0M0SEF9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P13920_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-42MYB family protein