PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P13490_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 436aa MW: 47489.2 Da PI: 6.9928

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P13490_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	279	327	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq GSMUA_Achr3P13490_001 279 NSHSLAERVRREKISERMKYLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 327 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.44E-10	274	331	No hit	No description
SuperFamily	SSF47459	4.84E-17	274	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.491	276	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	277	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	279	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-9	282	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MDTNENNKFE LEKNHGNHLS NHSSGISDHW QFNTSTSSMA AGLMNLVTSS PYPSASEMEP 60 FTPGLWNHHA ANCVPIGEPV AVSSGGMLPS TVPGISSPRL PHFPAETALV ERAARFPCFS 120 GRNFSGMNLL FRPSESMVPY TNAMEDVTEI QLGKTEMNTT VQNGVLLPVD NASVNRGLIT 180 NQIDCESREA NFTKGGQEGN TDSSDAARNS SPKKRRTTQK EEVKRGPQSS SETTKETTEG 240 KQKVDQNSSE HSGKNGKYSS EAAKGDCVHV RARRGQATNS HSLAERVRRE KISERMKYLQ 300 ELVPGCSKVT GKAVMLDEII NYVQSLQSQV EFLSMKLAAV NPQPEFSTEG LLAKNLLHSH 360 GGCSSATGLP QEMIYPQVSL YPSQQGLMHS AISAIINPSE ALRRDMNAQL STTSVYKESS 420 LQVILLIRPL ILPDLG

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MDTNENNKFE LEKNHGNHLS NHSSGISDHW QFNTSTSSMA AGLMNLVTSS PYPSASEMEP  60
FTPGLWNHHA ANCVPIGEPV AVSSGGMLPS TVPGISSPRL PHFPAETALV ERAARFPCFS  120
GRNFSGMNLL FRPSESMVPY TNAMEDVTEI QLGKTEMNTT VQNGVLLPVD NASVNRGLIT  180
NQIDCESREA NFTKGGQEGN TDSSDAARNS SPKKRRTTQK EEVKRGPQSS SETTKETTEG  240
KQKVDQNSSE HSGKNGKYSS EAAKGDCVHV RARRGQATNS HSLAERVRRE KISERMKYLQ  300
ELVPGCSKVT GKAVMLDEII NYVQSLQSQV EFLSMKLAAV NPQPEFSTEG LLAKNLLHSH  360
GGCSSATGLP QEMIYPQVSL YPSQQGLMHS AISAIINPSE ALRRDMNAQL STTSVYKESS  420
LQVILLIRPL ILPDLG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018678712.1	0.0	PREDICTED: transcription factor bHLH76-like isoform X4
Refseq	XP_018678713.1	0.0	PREDICTED: transcription factor bHLH76-like isoform X4
Refseq	XP_018678714.1	0.0	PREDICTED: transcription factor bHLH76-like isoform X5
Refseq	XP_018678715.1	0.0	PREDICTED: transcription factor bHLH76-like isoform X5
TrEMBL	M0SEB6	0.0	M0SEB6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P13490_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-63	bHLH family protein