PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P13070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 290aa    MW: 31756.7 Da    PI: 7.2375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P13070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.6e-192166147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  GSMUA_Achr3P13070_001 21 KGPWSPEEDDALQKLVQRHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 66
                           79******************************.***********985 PP
2Myb_DNA-binding56.56.2e-1875117347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  GSMUA_Achr3P13070_001  75 PFTPEEDETIIRAHRRFGNK-WATIARLLS-GRTDNAVKNHWNST 117
                            89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5191671IPR017930Myb domain
SuperFamilySSF466892.47E-3218114IPR009057Homeodomain-like
SMARTSM007175.7E-172069IPR001005SANT/Myb domain
PfamPF002494.2E-192166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-262274IPR009057Homeodomain-like
CDDcd001672.56E-162365No hitNo description
SMARTSM007173.9E-1572120IPR001005SANT/Myb domain
PROSITE profilePS5129420.48873122IPR017930Myb domain
CDDcd001671.33E-1275118No hitNo description
PfamPF002494.9E-1575117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2375121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAAAAAATTV VSRFNDVDRI KGPWSPEEDD ALQKLVQRHG PRNWSLISKS IPGRSGKSCR  60
LRWCNQLSPQ VEHRPFTPEE DETIIRAHRR FGNKWATIAR LLSGRTDNAV KNHWNSTLKR  120
RYSASATAVA VDGLCLSPGS PSESDLSDSS YHSHPMISPV STGSHIYRPP SAAAAATSCS  180
PEIVEDPVTS LTLSLPGSDP MDTCNDRHSA DNDGNGQKPL ELLPSEEQGW HAPCPFGAEF  240
LAAMQELIRK EVRSYMSSLE QSGMMCTRFP LPPESVLNAG IRRIGITKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40201213104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-40201213104C-Myb DNA-Binding Domain
1msf_C1e-40201213104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126173e-89CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392116.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-83MYB73_ARATH; Transcription factor MYB73
TrEMBLM0SE740.0M0SE74_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P13070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-78myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]