PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P12230_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 339aa MW: 37877.4 Da PI: 8.1204

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P12230_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.4e-52	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi++vd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++g+Wka GSMUA_Achr3P12230_001 11 VPPGFRFHPTEEELLNYYLRKKVTSEKIDL-DVIRDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKA 97 69**************************.9***********964443122456************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl GSMUA_Achr3P12230_001 98 TGRDKVIYS-SVKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 *****.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-56	7	180	IPR003441	NAC domain
PROSITE profile	PS51005	56.272	11	180	IPR003441	NAC domain
Pfam	PF02365	3.3E-28	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009809	Biological Process	lignin biosynthetic process
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0009901	Biological Process	anther dehiscence
GO:0010047	Biological Process	fruit dehiscence
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVTSEKIDL DVIRDVDLNK LEPWDIQEKC 60 RIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIYSSVKR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DHSDLLSQSN VRTCTRMHRY AMGEATNQED GWVVCRVFKK 180 KNHHKSIGSP NNSCSVTSDA KTQLLHHPGS GDDALDQILQ YMGRSCKRES HGTSINDEMF 240 MKLPGLQSPS VPSGNGYCAD PAVGDWAAFD RLLASQLNGP FEEPKPLPCC DDPCFTFHSS 300 AGYHHGGGGG SGSGSGDGDL WSMTRTTSSQ SDRISHVSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	8	182	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	8	182	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	8	182	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	8	182	14	167	NO APICAL MERISTEM PROTEIN
3ulx_A	1e-46	11	183	15	171	Stress-induced transcription factor NAC1
4dul_A	1e-46	8	182	14	167	NAC domain-containing protein 19
4dul_B	1e-46	8	182	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00321	DAP	Transfer from AT2G46770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391934.1	0.0	PREDICTED: NAC domain-containing protein 43
Swissprot	Q84WP6	1e-126	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	M0SDZ0	0.0	M0SDZ0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P12230_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1597	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-116	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]