PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P11110_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 394aa MW: 43278.9 Da PI: 8.5765

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P11110_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	327	372	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+YI++Lq GSMUA_Achr3P11110_001 327 SIAERVRRTKISERIRKLQELVPNM----DKQTNTADMLDLAVDYIHDLQ 372 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.907	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-16	324	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.17E-12	325	376	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-15	326	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-13	327	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-10	327	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MAALQLWPVY VCPSADCPTL DSARRGGETK EVMYGSPLAS SSSSKGLNLS HAPTVPFGGH 60 REEDAASELF RGHPHHHHHQ QMNPGLLRYR SAPSSLFEDP CENSLRATLL SAETENKGGT 120 VGCQRSPQFR QPPPVLSSEM VSSQQRPAYS SALPTMYHHS QQQLQMHNMP NHSLAEISQR 180 AVGSMATEMQ RIENGAGRNS TSLTRQSSSP AGLFSPLDVD AGYGKMMGLD GFGNGDLLPM 240 GDAANRLKDQ MSFLPRQNSL MSKIPELGSE EVQNGGMMMK HVSGLRHQLS LPKTSSEMAA 300 VENFLQFQDA VPCRTRAKRG CATHPRSIAE RVRRTKISER IRKLQELVPN MDKQTNTADM 360 LDLAVDYIHD LQKQVKALTE GRASCTCSRS KQQS

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MAALQLWPVY VCPSADCPTL DSARRGGETK EVMYGSPLAS SSSSKGLNLS HAPTVPFGGH  60
REEDAASELF RGHPHHHHHQ QMNPGLLRYR SAPSSLFEDP CENSLRATLL SAETENKGGT  120
VGCQRSPQFR QPPPVLSSEM VSSQQRPAYS SALPTMYHHS QQQLQMHNMP NHSLAEISQR  180
AVGSMATEMQ RIENGAGRNS TSLTRQSSSP AGLFSPLDVD AGYGKMMGLD GFGNGDLLPM  240
GDAANRLKDQ MSFLPRQNSL MSKIPELGSE EVQNGGMMMK HVSGLRHQLS LPKTSSEMAA  300
VENFLQFQDA VPCRTRAKRG CATHPRSIAE RVRRTKISER IRKLQELVPN MDKQTNTADM  360
LDLAVDYIHD LQKQVKALTE GRASCTCSRS KQQS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391823.1	0.0	PREDICTED: transcription factor bHLH130
TrEMBL	M0SDM8	0.0	M0SDM8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P11110_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-59	bHLH family protein