PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P10640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 423aa    MW: 46586.9 Da    PI: 9.0795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P10640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13189237255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r +h++ E rRR +iN++ + Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  GSMUA_Achr3P10640_001 189 RSKHSATEHRRRTKINDR-QILRELIPHS----DQKRDKASFLLEVIEYIRFLQ 237
                            889***************.*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-14184250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-18185254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.353187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10189237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-12189241No hitNo description
SMARTSM003532.0E-7193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MKFHFFFFVC CNHCLFLKTR DFLQPLEREG KGGEAADGGS VPAERNASSI SHIGAGQGAE  60
KPEGSALRVL PIGLQTKPEP DYGSRSTTTS YGSYAGGVSY TLWDDNDTAS RGQWPPPSLA  120
ALVATKHTWA PEKKRFMEAA ASRSSRGYQV DDEEEAFGKR QGSSSSHKDS SIKAEGRAFS  180
SEERPNTPRS KHSATEHRRR TKINDRQILR ELIPHSDQKR DKASFLLEVI EYIRFLQEKA  240
QNYESSYPGW NQDEIKLMPW QKKNPASKNA SQIIRNDSAA PAQILSEKLE NMPSTMVGSP  300
ATDVPAGNSC KTTEAATRFA SNMAIHDQSP WSVRSCRDML NEPEELALDE GTISVSAAYS  360
HGLLNTLTQA LQSSGVDLSR ASISVQINLG KRAKRTAATA TIKEQKDPAS IFQSSKRRKA  420
ENS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391766.20.0PREDICTED: transcription factor BIM2 isoform X1
RefseqXP_009391767.10.0PREDICTED: transcription factor BIM2 isoform X1
TrEMBLM0SDI10.0M0SDI1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P10640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-48BES1-interacting Myc-like protein 2