PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P10120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 545aa    MW: 58373.9 Da    PI: 6.5586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P10120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11344389555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  GSMUA_Achr3P10120_001 344 HSIAERLRREKIAERMKNLQELVPSS-----NKTDKASMLDEIIDYVKFLQ 389
                            99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16337399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-12337393No hitNo description
PROSITE profilePS5088817.034339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16341398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9344389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MDDLIDSFMS SPAWSDRNAS SKASWNGTSV SHTNGLLADS TEPYGEAKNP SVCMVPSSNI  60
IGNAAAEDLN VHGHDGTPSM FIDGSVNYGI LKDLYSGERL SHQNLHNQTS NSISMNNGTR  120
VRTFPLLGVT GSNQTSASFE SALPRGTLAI SSSIESNSSE LSAFPQSLGD AHSINSVPTI  180
WPSSYSSVSS FVGHGNSPAF GYQGNENNDY VLGKLSLENG KFHVDRLPAE SVHAKNQNEI  240
RDFSSFSVGQ HMNLIAGALL PQKEQNGLHS PSFPSGSCMM AVNKMAGIQT PQQLSPSSER  300
HTASHQINNT SSTPSLAVSA NASGCNGTAK PRARARRGQA TDPHSIAERL RREKIAERMK  360
NLQELVPSSN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GATGAVVPLL TDTQTEVSGS  420
LLLSSSAGQG SSDISESEDS LAFEQEVVKL METNVTTAMQ YLQNKGLCLM PIALATAISN  480
QKGFSTAIPP DRRKPIMSHG MAPLSHSSMD RNCNKNDVTG CNGTIVKQEA RESNDKTREL  540
DHEAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391706.10.0PREDICTED: transcription factor bHLH62
RefseqXP_009391707.10.0PREDICTED: transcription factor bHLH62
RefseqXP_018679449.10.0PREDICTED: transcription factor bHLH62
TrEMBLM0SDC90.0M0SDC9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P10120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.16e-57LJRHL1-like 3