PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P10060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 320aa    MW: 35344.5 Da    PI: 8.4655
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P10060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg WT+eEd +l+ +   +G+g+W+t++++ g++R++k+c++rw +yl
  GSMUA_Achr3P10060_001 14 RGLWTAEEDAKLLAYTSTHGTGNWTTVPKKAGLKRCGKSCRLRWTNYL 61
                           788*******************************************97 PP
2Myb_DNA-binding46.11.1e-1470110446
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +T eE+e++v +++  G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr3P10060_001  70 FTLEEEERIVALHATIGSR-WSIIANQLP-GRTDNDVKNYWNT 110
                            8******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.126965IPR017930Myb domain
SuperFamilySSF466894.87E-2912108IPR009057Homeodomain-like
SMARTSM007175.7E-141363IPR001005SANT/Myb domain
PfamPF002495.2E-151461IPR001005SANT/Myb domain
CDDcd001671.40E-101761No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129417.03866116IPR017930Myb domain
SMARTSM007175.0E-1266114IPR001005SANT/Myb domain
CDDcd001673.37E-970112No hitNo description
PfamPF002491.6E-1270110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRPPCCDKS TVKRGLWTAE EDAKLLAYTS THGTGNWTTV PKKAGLKRCG KSCRLRWTNY  60
LRPNLKHEGF TLEEEERIVA LHATIGSRWS IIANQLPGRT DNDVKNYWNT KLSKKLCQKG  120
IDPVTHRPIS EIIQSIEHLQ HETAAAAASR FNSNFRYKPA TAGARIGCLN RDLRSVFLSR  180
PAPTVNSASG SSSSPNLNLF AQTQVGSPIP TYFSPSEASS SSTAATTPKA TQPPSSPEFK  240
WTDFLIEDDD DAYAKNKAKE VVTWSDVAAK HNAAVDEGTS HRAGACYGSS SFVDAILEQE  300
RELVSKFYEE FLSYPNDLPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392068.10.0PREDICTED: transcription factor MYB35
TrEMBLM0SDC30.0M0SDC3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P10060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-68MYB family protein