PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P10050_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17473.9 Da PI: 6.2344 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142 | 1.9e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+C+kdC++apyfp+++p+kf +vh++FGasnv+k+l++lp ++r da+sslvyeA ar++dPvyG+vg i+ lq+q++ GSMUA_Achr3P10050_001 6 PCASCKLLRRRCTKDCIFAPYFPSDDPHKFSIVHRIFGASNVSKMLQELPVHQRADAVSSLVYEATARTKDPVYGCVGAISYLQNQVS 93 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 ql+ +la++++e GSMUA_Achr3P10050_001 94 QLQMQLAVAQTE 105 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.851 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.5E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MEGNSPCASC KLLRRRCTKD CIFAPYFPSD DPHKFSIVHR IFGASNVSKM LQELPVHQRA 60 DAVSSLVYEA TARTKDPVYG CVGAISYLQN QVSQLQMQLA VAQTEILCAQ MQQEPPMAEQ 120 QVEAYDNNLT GMPQLMNNAS SSNLAQDQLK REFLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-49 | 4 | 115 | 9 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-49 | 4 | 115 | 9 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391699.1 | 1e-115 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 9e-72 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | M0SDC2 | 1e-114 | M0SDC2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P10050_001 | 1e-115 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-70 | LBD family protein |
Publications ? help Back to Top | |||
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