PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P09940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 366aa    MW: 40134.7 Da    PI: 8.3426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P09940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31144201260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            dDgynWrKYGqK++kgse+p +YY+Ct+++Cp+kkkve s  d++++ei+Y+g+Hnh+k
  GSMUA_Achr3P09940_001 144 DDGYNWRKYGQKQIKGSENPVGYYKCTYPDCPTKKKVEMSI-DGEITEIVYKGSHNHPK 201
                            8****************************************.***************85 PP
2WRKY104.27.1e-33286344159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vk +++prsYY+Cts+gCpv+k+ver+++dp+ v++tYeg+Hnh+
  GSMUA_Achr3P09940_001 286 LDDGYRWRKYGQKVVKANRNPRSYYKCTSNGCPVRKHVERASNDPRSVITTYEGKHNHD 344
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26135202IPR003657WRKY domain
SuperFamilySSF1182901.44E-23141202IPR003657WRKY domain
SMARTSM007741.6E-31143201IPR003657WRKY domain
PfamPF031067.0E-24144200IPR003657WRKY domain
PROSITE profilePS5081121.735144202IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-36271346IPR003657WRKY domain
SuperFamilySSF1182908.5E-29278346IPR003657WRKY domain
PROSITE profilePS5081136.977281346IPR003657WRKY domain
SMARTSM007743.3E-37286345IPR003657WRKY domain
PfamPF031069.8E-26287344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MASSTRSLGS SAASIYATFT ELLTGVGNSQ GEDMTRLEMS RELAGGDTGG TSKFKSAPPP  60
FLPLSPPPPS ASFSFPTSLS LAELLESPLL LPSSSMLPSP TTGSLPAQHL NWSGGERKPE  120
VKVEDAVPIH ASSSQAVRGQ RRSDDGYNWR KYGQKQIKGS ENPVGYYKCT YPDCPTKKKV  180
EMSIDGEITE IVYKGSHNHP KPLSTRKLSA PLPSQTSDHR FADPVLTPEN SSVSCCGSEA  240
KEFDDDEHDA KRSRKEDEGK YFSAPGNRTV REPRVVVQTP SDVDILDDGY RWRKYGQKVV  300
KANRNPRSYY KCTSNGCPVR KHVERASNDP RSVITTYEGK HNHDVPAART PQPDSAMADH  360
VTLFPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-35144347878Probable WRKY transcription factor 4
2lex_A3e-35144347878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391694.20.0PREDICTED: WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-100WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLM0SDB10.0M0SDB1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P09940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-85WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]