PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P09050_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 371aa    MW: 41993.5 Da    PI: 7.2725
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P09050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-17132178148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g WT+eEd  l ++v+++G + W+ +ar+++ gR +kqc++rw+++l
  GSMUA_Achr3P09050_001 132 KGQWTAEEDSMLMELVERYGIRKWSHVARMLN-GRIGKQCRERWHNHL 178
                            799*****************************.*************97 PP

2Myb_DNA-binding60.92.7e-19186228347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +W++eEd++l++a+ qlG++ W  Ia++++ gRt++++k++w++ 
  GSMUA_Achr3P09050_001 186 SWSEEEDKILIQAHSQLGNR-WVEIAKRLP-GRTENSIKNHWNTN 228
                            7*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.489127182IPR017930Myb domain
SuperFamilySSF466895.03E-32129225IPR009057Homeodomain-like
SMARTSM007175.7E-15131180IPR001005SANT/Myb domain
PfamPF002491.1E-15132178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-25133183IPR009057Homeodomain-like
CDDcd001676.19E-14135178No hitNo description
PROSITE profilePS5129420.91183233IPR017930Myb domain
SMARTSM007173.9E-18183231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21184231IPR009057Homeodomain-like
CDDcd001675.69E-15186229No hitNo description
PfamPF002492.1E-17186228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEFGCPKSLL PMAFHHELHW FQGSGDLLDV LSNGCSSDFV RCFPHNTFSD DLNSTLMLQK  60
IDPPSYSTRI IGDRDLMVCN STEFNISLDA FHDLSTMVAG SQAQKKVQID TNTIVAAKND  120
SCRVQKKSNV VKGQWTAEED SMLMELVERY GIRKWSHVAR MLNGRIGKQC RERWHNHLRP  180
NIKVDSWSEE EDKILIQAHS QLGNRWVEIA KRLPGRTENS IKNHWNTNKR RQSSRRTCRK  240
SKDAKRSTLL QNYIRSLNLT SSPPPVESSS KNGMQREAVN VQGDGDGDRF LHGWGLGEAP  300
EMLLDSRMLP DTDDMISCLF DQLGCSVRIG KVCDAATTWD GVPPLVIPSE DVKRDVDLLE  360
MIAMNSSSSR E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-451302322104C-Myb DNA-Binding Domain
1msf_C7e-451302322104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021292452.12e-76transcription factor MYB98-like
TrEMBLM0SD220.0M0SD22_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P09050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-66myb domain protein 98