PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P09050_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 41993.5 Da PI: 7.2725 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 132 | 178 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l ++v+++G + W+ +ar+++ gR +kqc++rw+++l GSMUA_Achr3P09050_001 132 KGQWTAEEDSMLMELVERYGIRKWSHVARMLN-GRIGKQCRERWHNHL 178 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 60.9 | 2.7e-19 | 186 | 228 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eEd++l++a+ qlG++ W Ia++++ gRt++++k++w++ GSMUA_Achr3P09050_001 186 SWSEEEDKILIQAHSQLGNR-WVEIAKRLP-GRTENSIKNHWNTN 228 7*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.489 | 127 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-32 | 129 | 225 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-15 | 131 | 180 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 132 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-25 | 133 | 183 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.19E-14 | 135 | 178 | No hit | No description |
PROSITE profile | PS51294 | 20.91 | 183 | 233 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-18 | 183 | 231 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 184 | 231 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.69E-15 | 186 | 229 | No hit | No description |
Pfam | PF00249 | 2.1E-17 | 186 | 228 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEFGCPKSLL PMAFHHELHW FQGSGDLLDV LSNGCSSDFV RCFPHNTFSD DLNSTLMLQK 60 IDPPSYSTRI IGDRDLMVCN STEFNISLDA FHDLSTMVAG SQAQKKVQID TNTIVAAKND 120 SCRVQKKSNV VKGQWTAEED SMLMELVERY GIRKWSHVAR MLNGRIGKQC RERWHNHLRP 180 NIKVDSWSEE EDKILIQAHS QLGNRWVEIA KRLPGRTENS IKNHWNTNKR RQSSRRTCRK 240 SKDAKRSTLL QNYIRSLNLT SSPPPVESSS KNGMQREAVN VQGDGDGDRF LHGWGLGEAP 300 EMLLDSRMLP DTDDMISCLF DQLGCSVRIG KVCDAATTWD GVPPLVIPSE DVKRDVDLLE 360 MIAMNSSSSR E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-45 | 130 | 232 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-45 | 130 | 232 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021292452.1 | 2e-76 | transcription factor MYB98-like | ||||
TrEMBL | M0SD22 | 0.0 | M0SD22_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P09050_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 9e-66 | myb domain protein 98 |