PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P08880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 408aa    MW: 44453.6 Da    PI: 6.2745
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P08880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186.2e-063879338
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                           e  C+ ++  ++ l+C+ +   lC  C  + H        H+
  GSMUA_Achr3P08880_001 38 EESCDYCGAARALLWCRADAARLCLACDRHVHAAnsvssrHR 79
                           678***************************995555666666 PP
2zf-B_box26.71.1e-0881124342
               zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                            +  C+ + +++  ++C +C+ llC++C +  H +    H+++p+
  GSMUA_Achr3P08880_001  81 ALLCDACRSEPSAIHCSSCRALLCANCDFDAHGRagllHDRRPV 124
                            568*****************************669999998875 PP
3CCT59.98.3e-21362404143
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                            R+  +lRY+eKrktRk++K irYesRK +A+sR R+KGrF+k 
  GSMUA_Achr3P08880_001 362 RNSVILRYQEKRKTRKYNKLIRYESRKIRADSRLRIKGRFAKT 404
                            78899************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3143683IPR000315B-box-type zinc finger
SMARTSM003368.8E-123683IPR000315B-box-type zinc finger
CDDcd000217.44E-74183No hitNo description
PROSITE profilePS5011911.27779124IPR000315B-box-type zinc finger
CDDcd000211.13E-683124No hitNo description
SMARTSM003360.8884124IPR000315B-box-type zinc finger
PROSITE profilePS5101714.316362404IPR010402CCT domain
PfamPF062032.4E-15362404IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGQEGEATAP VVAVVEEEEI GRGRGGGGGG GERGGTGEES CDYCGAARAL LWCRADAARL  60
CLACDRHVHA ANSVSSRHRR ALLCDACRSE PSAIHCSSCR ALLCANCDFD AHGRAGLLHD  120
RRPVEGFSGC PSAGKLVSAL GVGGDEKEVL EGEADDVGDY LVEDGSVWEA QPVLSFEDFI  180
VPTTASHGFQ AMGMPPLPKH RNSTCGKHKE EIIQQIRDLI KLESGTNDYH EVVAPIMESY  240
GWVSEQNIQI DYLGPASNNS WNVGPASNNS WNVTTPHEDI TLEGNQIDCR EANTTIGLLN  300
PPGEYPRTSS AVNLSSLNKA AEANACKSHG NDTNTDHVEF VPQDEMQHLP LKGIYKLARA  360
DRNSVILRYQ EKRKTRKYNK LIRYESRKIR ADSRLRIKGR FAKTNPSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391569.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLM0SD050.0M0SD05_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P08880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-55B-box type zinc finger protein with CCT domain