PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P08640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SRS | ||||||||
Protein Properties | Length: 319aa MW: 33562.2 Da PI: 7.6043 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 207.7 | 3e-64 | 111 | 265 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 +g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rrer+ ++a++ + +++ask++r +++ +++s+t+ GSMUA_Achr3P08640_001 111 VGESTCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHVKSTWVPASRRRERHVAAASSFA------STSASKKPRLV-ASQPATASHTS 191 6889*********************************************9766666543......45678888876.67777888899 PP DUF702 91 lssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++++++t+s lP +v+++avf+cvrv+s+ddge+e+aY+++v+igG vfkG+LydqGl++ GSMUA_Achr3P08640_001 192 TPNTTPPRSFDTTSshqdagaienLPGHVRAPAVFKCVRVTSIDDGEDEYAYHAVVKIGGRVFKGFLYDQGLDD 265 999999999999988999999999***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.0E-59 | 113 | 264 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.1E-26 | 115 | 157 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.4E-26 | 216 | 263 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MMVLASAASY HQQCHHESLL SSSAAAEQHP VIPLLAAASC VVEDDNPTAR ARPGGIHLWQ 60 PVLPQLPHPH APNPNPNPNP NANLANYLRK AVPTTDLSGI LLGGGAAAAG VGESTCQDCG 120 NQAKKDCSHR RCRTCCKSRG FECSTHVKST WVPASRRRER HVAAASSFAS TSASKKPRLV 180 ASQPATASHT STPNTTPPRS FDTTSSHQDA GAIENLPGHV RAPAVFKCVR VTSIDDGEDE 240 YAYHAVVKIG GRVFKGFLYD QGLDDGGHAD DANDAIPNIS ELHLGNRHGG LSSSPMLPSN 300 VFGDGSGFIG GTNYGNQTN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391542.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 1e-68 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | M0SCY1 | 0.0 | M0SCY1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P08640_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3579 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 8e-64 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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