PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P08500_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 230aa    MW: 26464.5 Da    PI: 8.8188
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P08500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF581.2e-181151343
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                           i n+s r  tf kRr+g++KK +ELS+LCd+++++i+++++
  GSMUA_Achr3P08500_001 11 IANDSTRRATFKKRRKGLMKKVSELSTLCDVKACMIVYGPQ 51
                           89*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.857149IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-23160IPR002100Transcription factor, MADS-box
CDDcd002661.21E-32285No hitNo description
SuperFamilySSF554551.19E-24394IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-11323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARKKVNLAW IANDSTRRAT FKKRRKGLMK KVSELSTLCD VKACMIVYGP QEPHPEVWPS  60
VPEATRVLAR FKSMPEMEQC KKMMNQEGFL RQRVAKLQEQ LRKQARENRE LEVALLVHEG  120
LAGRSLDDVS IEDATSLAWM VEMKAKVVHD RIERVRKEHV ASALRTAETT VATREKTPVE  180
AAMEALQRQD WFMEVMNPND HNVMFGGGDE TIPSYIDHSS PWLDPYYPLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAWIANDSTRRATFKKRR
22125KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392051.11e-173PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-43AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLM0SCW71e-171M0SCW7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P08500_0011e-172(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-45AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]