PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P08500_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26464.5 Da PI: 8.8188 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58 | 1.2e-18 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r tf kRr+g++KK +ELS+LCd+++++i+++++ GSMUA_Achr3P08500_001 11 IANDSTRRATFKKRRKGLMKKVSELSTLCDVKACMIVYGPQ 51 89*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.857 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.21E-32 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.19E-24 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-18 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MARKKVNLAW IANDSTRRAT FKKRRKGLMK KVSELSTLCD VKACMIVYGP QEPHPEVWPS 60 VPEATRVLAR FKSMPEMEQC KKMMNQEGFL RQRVAKLQEQ LRKQARENRE LEVALLVHEG 120 LAGRSLDDVS IEDATSLAWM VEMKAKVVHD RIERVRKEHV ASALRTAETT VATREKTPVE 180 AAMEALQRQD WFMEVMNPND HNVMFGGGDE TIPSYIDHSS PWLDPYYPLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVNLAWIANDSTRRATFKKRR |
2 | 21 | 25 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392051.1 | 1e-173 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 5e-43 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M0SCW7 | 1e-171 | M0SCW7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P08500_001 | 1e-172 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-45 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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