PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P08370_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 287aa    MW: 33007.4 Da    PI: 9.8056
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P08370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.5e-192370148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT++Ed++l ++v+ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr3P08370_001 23 RGPWTADEDLILMNYVTAHGEGRWNSLARRAGLRRTGKSCRLRWLNYL 70
                           89********************************************97 PP

2Myb_DNA-binding54.62.5e-1776119146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T+eE++l+++++ +lG++ W++Iar+++ gRt++++k++w++
  GSMUA_Achr3P08370_001  76 RGNITPEEQLLILELHFRLGNR-WSKIARHLP-GRTDNEIKNYWRT 119
                            7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.3021874IPR017930Myb domain
SuperFamilySSF466891.08E-3020117IPR009057Homeodomain-like
SMARTSM007174.2E-142272IPR001005SANT/Myb domain
PfamPF002491.8E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-232477IPR009057Homeodomain-like
CDDcd001671.46E-102570No hitNo description
PROSITE profilePS5129418.67875125IPR017930Myb domain
SMARTSM007172.1E-1575123IPR001005SANT/Myb domain
PfamPF002491.6E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2378124IPR009057Homeodomain-like
CDDcd001671.02E-1180119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEFQGRACGS ATPPSEEEME LRRGPWTADE DLILMNYVTA HGEGRWNSLA RRAGLRRTGK  60
SCRLRWLNYL RPDVRRGNIT PEEQLLILEL HFRLGNRWSK IARHLPGRTD NEIKNYWRTR  120
VQKHAKQLRC DARLSSPPAS ESVTESRGIQ GVGVDWMQGA QPPSPGGYAF SGLPDVDQSG  180
WGESLWSDKP YNLFHDVSNA HHSAAKGYSD CCRTQLYWLQ LASYMKNLLQ EPSQKSHLDL  240
NLRDHYRIVL TSLQALFKTK RGRYRCPRAL LCFCSAFTWQ QFSSRPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-262012324126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392050.19e-91PREDICTED: transcription factor MYB108-like
TrEMBLM0SCV40.0M0SCV4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P08370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.14e-65myb domain protein 57