PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P08370_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 33007.4 Da PI: 9.8056 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.5e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l ++v+ +G g+W++ ar+ g++Rt+k+c++rw++yl GSMUA_Achr3P08370_001 23 RGPWTADEDLILMNYVTAHGEGRWNSLARRAGLRRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ +lG++ W++Iar+++ gRt++++k++w++ GSMUA_Achr3P08370_001 76 RGNITPEEQLLILELHFRLGNR-WSKIARHLP-GRTDNEIKNYWRT 119 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.302 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-30 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-14 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-10 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 18.678 | 75 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-11 | 80 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEFQGRACGS ATPPSEEEME LRRGPWTADE DLILMNYVTA HGEGRWNSLA RRAGLRRTGK 60 SCRLRWLNYL RPDVRRGNIT PEEQLLILEL HFRLGNRWSK IARHLPGRTD NEIKNYWRTR 120 VQKHAKQLRC DARLSSPPAS ESVTESRGIQ GVGVDWMQGA QPPSPGGYAF SGLPDVDQSG 180 WGESLWSDKP YNLFHDVSNA HHSAAKGYSD CCRTQLYWLQ LASYMKNLLQ EPSQKSHLDL 240 NLRDHYRIVL TSLQALFKTK RGRYRCPRAL LCFCSAFTWQ QFSSRPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-26 | 20 | 123 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392050.1 | 9e-91 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | M0SCV4 | 0.0 | M0SCV4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P08370_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01530.1 | 4e-65 | myb domain protein 57 |