PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P07940_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 282aa    MW: 31815.6 Da    PI: 4.7468
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P07940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W++ Ed +lvd+++ +G g W+  +++ g++R++k+c++rw++yl
  GSMUA_Achr3P07940_001 14 RGAWSAREDNILVDYIRTHGEGKWRDLPKRAGLKRCGKSCRLRWLNYL 61
                           89********************************************97 PP

2Myb_DNA-binding52.71e-1667111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
  GSMUA_Achr3P07940_001  67 RGNITQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                            7999******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.433961IPR017930Myb domain
SuperFamilySSF466891.48E-2812108IPR009057Homeodomain-like
SMARTSM007175.9E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221568IPR009057Homeodomain-like
CDDcd001671.06E-91661No hitNo description
PROSITE profilePS5129425.6362116IPR017930Myb domain
SMARTSM007176.0E-1666114IPR001005SANT/Myb domain
PfamPF002495.2E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2469115IPR009057Homeodomain-like
CDDcd001672.03E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRRPCCSKE GLNRGAWSAR EDNILVDYIR THGEGKWRDL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TQDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKKTMPPL  120
CTKGSSKEKE EKKVGSSEEL KAAGEQLPAH VIQTKAVRCT KVYLPSPRDD PLTTGPSSEL  180
THGESPSSSV PRDADPASFL EDFDMDEFMS SFQEDGLLQL CVDEAHEDAN YAREDADDDS  240
LWFCDPMQMD LSDGNSCTES QVAAEVERLT YLIDCEEEAQ DK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391459.10.0PREDICTED: transcription repressor MYB5-like
TrEMBLM0SCR10.0M0SCR1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P07940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-63myb domain protein 3