PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P07940_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 31815.6 Da PI: 4.7468 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed +lvd+++ +G g W+ +++ g++R++k+c++rw++yl GSMUA_Achr3P07940_001 14 RGAWSAREDNILVDYIRTHGEGKWRDLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 1e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ GSMUA_Achr3P07940_001 67 RGNITQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.433 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.63 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGRRPCCSKE GLNRGAWSAR EDNILVDYIR THGEGKWRDL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TQDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKKTMPPL 120 CTKGSSKEKE EKKVGSSEEL KAAGEQLPAH VIQTKAVRCT KVYLPSPRDD PLTTGPSSEL 180 THGESPSSSV PRDADPASFL EDFDMDEFMS SFQEDGLLQL CVDEAHEDAN YAREDADDDS 240 LWFCDPMQMD LSDGNSCTES QVAAEVERLT YLIDCEEEAQ DK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391459.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
TrEMBL | M0SCR1 | 0.0 | M0SCR1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P07940_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-63 | myb domain protein 3 |