PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P07860_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Nin-like

Protein Properties

Length: 349aa MW: 39226.6 Da PI: 5.8942

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P07860_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.4	3.2e-24	258	307	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++sl++l+ yF+lpi+dAAk L++c T++K +CR++G++RWP+Rkiks+ GSMUA_Achr3P07860_001 258 HNMSLKELADYFHLPIADAAKRLKLCSTAIKHACRRNGVARWPSRKIKSI 307 799*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.699	247	329	IPR003035	RWP-RK domain
Pfam	PF02042	8.1E-21	259	307	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MDKPDRSDAE DDILRYLNFS DPEPLPLPPP PPPLPNDHHP ARLDQTPEPA YDDSPVWGLN 60 YESILQGVQD FDSGEGSSRN TEVVDPVFVQ FQPGQLDCTN CCVLRELVHS NGTHNVKVVV 120 HGGPGFFTHA IFEIEHQGEM GQHGTVDYYY INLSTQTGAW VEGFLKMYIM LLDADGSVIM 180 QDTATPYYNA LCGGVKTELP DYSIMESWLQ PSEQAPGEAL MHACTRTCFR FSVNFSLIAS 240 LTRMLTRVGV VRQRERAHNM SLKELADYFH LPIADAAKRL KLCSTAIKHA CRRNGVARWP 300 SRKIKSIDRQ IAILEKQLLG SSHEAIMEKI NEIEKLKAKK ERLYAGLES

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MDKPDRSDAE DDILRYLNFS DPEPLPLPPP PPPLPNDHHP ARLDQTPEPA YDDSPVWGLN  60
YESILQGVQD FDSGEGSSRN TEVVDPVFVQ FQPGQLDCTN CCVLRELVHS NGTHNVKVVV  120
HGGPGFFTHA IFEIEHQGEM GQHGTVDYYY INLSTQTGAW VEGFLKMYIM LLDADGSVIM  180
QDTATPYYNA LCGGVKTELP DYSIMESWLQ PSEQAPGEAL MHACTRTCFR FSVNFSLIAS  240
LTRMLTRVGV VRQRERAHNM SLKELADYFH LPIADAAKRL KLCSTAIKHA CRRNGVARWP  300
SRKIKSIDRQ IAILEKQLLG SSHEAIMEKI NEIEKLKAKK ERLYAGLES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M0SCQ3	0.0	M0SCQ3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P07860_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	6e-12	NIN like protein 7