PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P07700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 205aa MW: 24011.9 Da PI: 7.3041 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 5 | 49 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + W + Ed +l ++v+++G+++W++Ia++++ gR++k+c++rw++ GSMUA_Achr3P07700_001 5 DHWRPAEDAKLTELVAKYGPHNWNAIAEMLQ-GRSGKSCRLRWYNQ 49 68*****************************.************96 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++T+eEd+ll+ a++ +G++ W+ Iar ++ gRt++ +k++w+ GSMUA_Achr3P07700_001 56 KNPFTEEEDQLLLAAHQIYGNR-WAIIARLFP-GRTDNAVKNHWHV 99 689*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.041 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.09E-31 | 4 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.6E-17 | 5 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-27 | 6 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.67E-13 | 7 | 48 | No hit | No description |
PROSITE profile | PS51294 | 26.956 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-17 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-16 | 56 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.83E-12 | 58 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 58 | 104 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MCTKDHWRPA EDAKLTELVA KYGPHNWNAI AEMLQGRSGK SCRLRWYNQL DPRINKNPFT 60 EEEDQLLLAA HQIYGNRWAI IARLFPGRTD NAVKNHWHVI MARKHKERSR LHGNFVDEEQ 120 SQRCKKRKLE PRNMVSMIEE SDRTSVTHDG LIADRDNSME FYDFLQVNSD SDSTQEDLGR 180 KREEDGEEKK GTHVRFIDFM AVGSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-36 | 1 | 104 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-36 | 1 | 104 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391437.1 | 1e-146 | PREDICTED: myb-related protein A-like | ||||
Swissprot | Q6R0C4 | 3e-70 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | M0SCN7 | 1e-153 | M0SCN7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P07700_001 | 1e-154 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-71 | myb domain protein 52 |
Publications ? help Back to Top | |||
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