PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P07700_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 205aa    MW: 24011.9 Da    PI: 7.3041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P07700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-17549247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           + W + Ed +l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  GSMUA_Achr3P07700_001  5 DHWRPAEDAKLTELVAKYGPHNWNAIAEMLQ-GRSGKSCRLRWYNQ 49
                           68*****************************.************96 PP

2Myb_DNA-binding58.21.9e-185699146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           ++++T+eEd+ll+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  GSMUA_Achr3P07700_001 56 KNPFTEEEDQLLLAAHQIYGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                           689*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.041150IPR017930Myb domain
SMARTSM007172.7E-15352IPR001005SANT/Myb domain
SuperFamilySSF466895.09E-31497IPR009057Homeodomain-like
PfamPF002495.6E-17550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-27657IPR009057Homeodomain-like
CDDcd001671.67E-13748No hitNo description
PROSITE profilePS5129426.95651105IPR017930Myb domain
SMARTSM007175.5E-1755103IPR001005SANT/Myb domain
PfamPF002498.9E-165698IPR001005SANT/Myb domain
CDDcd001672.83E-125898No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2258104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MCTKDHWRPA EDAKLTELVA KYGPHNWNAI AEMLQGRSGK SCRLRWYNQL DPRINKNPFT  60
EEEDQLLLAA HQIYGNRWAI IARLFPGRTD NAVKNHWHVI MARKHKERSR LHGNFVDEEQ  120
SQRCKKRKLE PRNMVSMIEE SDRTSVTHDG LIADRDNSME FYDFLQVNSD SDSTQEDLGR  180
KREEDGEEKK GTHVRFIDFM AVGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-3611041104C-Myb DNA-Binding Domain
1msf_C3e-3611041104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391437.11e-146PREDICTED: myb-related protein A-like
SwissprotQ6R0C43e-70MYB52_ARATH; Transcription factor MYB52
TrEMBLM0SCN71e-153M0SCN7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P07700_0011e-154(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-71myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]