PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P07310_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28028.8 Da PI: 8.9919 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.9 | 1.1e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifsstg+lye+ss GSMUA_Achr3P07310_001 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSSTGRLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 90.3 | 3.5e-30 | 77 | 170 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++ ++++ + +q+e+a L+++++nLq+++R+l+Ge+L+ L++k+Lq+Le+qLe sl+++R kK++ll+e+i+el +k + +++en+ GSMUA_Achr3P07310_001 77 QQIVSATSELKFWQREAASLRQQLHNLQENHRQLMGEELSGLNVKDLQNLENQLEMSLRNVRMKKDQLLIEEIQELDQKGRFIHQENM 164 3333688999****************************************************************************** PP K-box 93 aLrkkl 98 +L+kk+ GSMUA_Achr3P07310_001 165 ELHKKV 170 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.875 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.39E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.4E-28 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.454 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGKIVIRR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVIFSS TGRLYEFSSS 60 SMKSVIERYT KAKEEQQQIV SATSELKFWQ REAASLRQQL HNLQENHRQL MGEELSGLNV 120 KDLQNLENQL EMSLRNVRMK KDQLLIEEIQ ELDQKGRFIH QENMELHKKV NLVRQENMEL 180 HKKVYETRGT TGSDGGSIIP YGFSFTDEAH VPIHLELSQP QQQADGTQTQ PPNLGLQLQL 240 TRGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_B | 1e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_C | 1e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_D | 1e-20 | 1 | 77 | 1 | 77 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391396.1 | 1e-180 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_018679288.1 | 1e-180 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 1e-123 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | M0SCJ8 | 1e-179 | M0SCJ8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P07310_001 | 1e-179 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-107 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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