PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P07020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 321aa    MW: 35610.1 Da    PI: 8.6136
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P07020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35261192103
                            HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
           HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                            Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+k
  GSMUA_Achr3P07020_001  26 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRK 104
                            9********************6667*****************************************999.........********** PP

                            XXXXXXXXXXXXXXX CS
           HSF_DNA-bind  89 gkkellekikrkkse 103
                            g+k+ll++i+r+ks+
  GSMUA_Achr3P07020_001 105 GEKHLLCEIHRRKSA 119
                            ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3616111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5822116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3026116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEIGCWEGAG GGAGAAEAHK PVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE  60
FARDILPNYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKHLL CEIHRRKSAS  120
LAGPHWRDAP GGGGKEPVMV AALVEENERL RRSNAALLSE LAHMRQLYND IIYFVQNHVR  180
PVAPSSAAVA SANFLLSSAY NQRRTGLKSG STTSSSSLTI VEEPSPPSPH LEQSPKNHHH  240
HNSGNCNGES SSTRPKLFGV SLDGCSSSSS SSKRGWQPDE PTSPSTRPRL ALDKMDLGFH  300
LMPPSPPFIF PLMAYIQIFV Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-201211617129Heat shock factor protein 1
5d5v_B1e-201211617129Heat shock factor protein 1
5d5v_D1e-201211617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391363.20.0PREDICTED: heat stress transcription factor B-4c-like
SwissprotQ9C6351e-91HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLM0SCG90.0M0SCG9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P07020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-82heat shock transcription factor B4