PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P06990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 225aa    MW: 25828.4 Da    PI: 9.6281
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P06990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.91.2e-311859102
                            HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
           HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                            ++e++ ++e+isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv  e+         weF++++F++g+k+ll++
  GSMUA_Achr3P06990_001   1 MVEESGTDEMISWGKKGESFVVWKPAEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVVAER---------WEFTNDNFRQGEKKLLRN 79 
                            899*******************************************************999.........****************** PP

                            XXXXXX CS
           HSF_DNA-bind  97 ikrkks 102
                            i+r+k 
  GSMUA_Achr3P06990_001  80 IHRRKP 85 
                            ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-32183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-43183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-29183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVEESGTDEM ISWGKKGESF VVWKPAEFAR DLLPLHFKHN NFSSFVRQLN TYGFRKVVAE  60
RWEFTNDNFR QGEKKLLRNI HRRKPASEPR PSADDKSSSR HEIRLPPSST SNSWDRHSSS  120
SASSPPPLPL KQPLELANEN EKLRKDHYVL NTELDRAKCR FHELLRILSK YVDVSQLELG  180
LPMRPAAAEA AEIVIKMGLK SKILESCDGL SKSLSIKLVD IDHYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B4e-2218812110Heat shock factor protein 2
5d8l_B4e-2218812110Heat shock factor protein 2
5d8l_D4e-2218812110Heat shock factor protein 2
5d8l_F4e-2218812110Heat shock factor protein 2
5d8l_H4e-2218812110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381467.14e-70PREDICTED: heat stress transcription factor B-1-like
SwissprotQ67TP94e-54HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLM0SCG61e-164M0SCG6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P06990_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-42heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]