PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P06990_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 225aa MW: 25828.4 Da PI: 9.6281 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100.9 | 1.2e-31 | 1 | 85 | 9 | 102 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 ++e++ ++e+isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv e+ weF++++F++g+k+ll++ GSMUA_Achr3P06990_001 1 MVEESGTDEMISWGKKGESFVVWKPAEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVVAER---------WEFTNDNFRQGEKKLLRN 79 899*******************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k GSMUA_Achr3P06990_001 80 IHRRKP 85 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.0E-32 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-43 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.21E-29 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-27 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-9 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 33 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-9 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVEESGTDEM ISWGKKGESF VVWKPAEFAR DLLPLHFKHN NFSSFVRQLN TYGFRKVVAE 60 RWEFTNDNFR QGEKKLLRNI HRRKPASEPR PSADDKSSSR HEIRLPPSST SNSWDRHSSS 120 SASSPPPLPL KQPLELANEN EKLRKDHYVL NTELDRAKCR FHELLRILSK YVDVSQLELG 180 LPMRPAAAEA AEIVIKMGLK SKILESCDGL SKSLSIKLVD IDHYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 4e-22 | 1 | 88 | 12 | 110 | Heat shock factor protein 2 |
5d8l_B | 4e-22 | 1 | 88 | 12 | 110 | Heat shock factor protein 2 |
5d8l_D | 4e-22 | 1 | 88 | 12 | 110 | Heat shock factor protein 2 |
5d8l_F | 4e-22 | 1 | 88 | 12 | 110 | Heat shock factor protein 2 |
5d8l_H | 4e-22 | 1 | 88 | 12 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009381467.1 | 4e-70 | PREDICTED: heat stress transcription factor B-1-like | ||||
Swissprot | Q67TP9 | 4e-54 | HSFB1_ORYSJ; Heat stress transcription factor B-1 | ||||
TrEMBL | M0SCG6 | 1e-164 | M0SCG6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P06990_001 | 1e-165 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-42 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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