PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P06020_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 152aa MW: 16694.9 Da PI: 10.5142

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P06020_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.6	2.6e-35	29	119	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y++++d +++ ++sw + +nsfvv+++ +fa+++LpkyFkhsnf+SFvRQLn+YgFkkv+ ++ weF+++ F +g GSMUA_Achr3P06020_001 29 FLSKTYDMVDDLATDAIVSWGAGNNSFVVWNTPDFARHLLPKYFKHSNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFLRG 107 9**************************************************************999.........******* PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k+ll++i+r+k GSMUA_Achr3P06020_001 108 QKQLLKTINRRK 119 ********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.2E-38	22	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.17E-34	24	118	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-58	25	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-19	29	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.1E-31	29	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	68	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-19	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MEKCGGDGEA VAATAGAIPG MNGSAPPPFL SKTYDMVDDL ATDAIVSWGA GNNSFVVWNT 60 PDFARHLLPK YFKHSNFSSF VRQLNTYGFK KVDPDRWEFA NEGFLRGQKQ LLKTINRRKP 120 FWVGGRHRGA KKRQECTQAG ARQAAATAAS RG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-26	19	118	18	129	Heat shock factor protein 1
5d5v_B	2e-26	19	118	18	129	Heat shock factor protein 1
5d5v_D	2e-26	19	118	18	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018678756.1	9e-87	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	2e-59	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	M0SC70	1e-110	M0SC70_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P06020_001	1e-110	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02990.1	1e-58	heat shock transcription factor A1E

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]