PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P05880_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 404aa    MW: 45009.5 Da    PI: 10.5419
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P05880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.6e-1590179186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +W++  +  Li+a  e+  +l+rg+lk+++W+ev++++ ++ g+++ pk   qCk++++ l+k+yk +k   +    +++s++p+f++
  GSMUA_Achr3P05880_001  90 CWSEGATSILIDAWGERFLELSRGNLKQKHWQEVADAItSRDGYTKAPKtdvQCKNRIDTLKKKYKIEKSKVSATGGGATSSWPFFHR 177
                            7************************************9878899876643339**************99999988899999******* PP

               trihelix  85 le 86 
                            l+
  GSMUA_Achr3P05880_001 178 LD 179
                            97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2588179No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEDDDDTQSP SRSQSQSVSR SLSPPSSPPP VSVVSPSPGP SPHHHHNGQV AEAVTVAAPP  60
HHALPLALPI QQPRPSPAAG GGGGGGREDC WSEGATSILI DAWGERFLEL SRGNLKQKHW  120
QEVADAITSR DGYTKAPKTD VQCKNRIDTL KKKYKIEKSK VSATGGGATS SWPFFHRLDL  180
LLGPNHKPAP PPPGSDIPAG IPIRPPARLP QLIPQRPRTS QPARKKARAA NGKRQRREPE  240
EEEEVGGGRM AGLRELTQAI LRFGQVYERV ENSKLRQVLE IEKQRMEFTR ELELQRMEFL  300
MKTQMELSQL NNNHHHHGSN SRKKKRLDDA GARLGRTQVF RSVSLLVTRT TKSVVISVYI  360
LSLSCLRYIL FKCYELQYVM VIFSMTMMSL TIWVSVFRSK LAQL
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391219.11e-161PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG86e-47ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM0SC560.0M0SC56_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P05880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-36sequence-specific DNA binding transcription factors