PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr3P05880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 404aa MW: 45009.5 Da PI: 10.5419 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49 | 1.6e-15 | 90 | 179 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++ + Li+a e+ +l+rg+lk+++W+ev++++ ++ g+++ pk qCk++++ l+k+yk +k + +++s++p+f++ GSMUA_Achr3P05880_001 90 CWSEGATSILIDAWGERFLELSRGNLKQKHWQEVADAItSRDGYTKAPKtdvQCKNRIDTLKKKYKIEKSKVSATGGGATSSWPFFHR 177 7************************************9878899876643339**************99999988899999******* PP trihelix 85 le 86 l+ GSMUA_Achr3P05880_001 178 LD 179 97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-25 | 88 | 179 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 404 aa Download sequence Send to blast |
MEDDDDTQSP SRSQSQSVSR SLSPPSSPPP VSVVSPSPGP SPHHHHNGQV AEAVTVAAPP 60 HHALPLALPI QQPRPSPAAG GGGGGGREDC WSEGATSILI DAWGERFLEL SRGNLKQKHW 120 QEVADAITSR DGYTKAPKTD VQCKNRIDTL KKKYKIEKSK VSATGGGATS SWPFFHRLDL 180 LLGPNHKPAP PPPGSDIPAG IPIRPPARLP QLIPQRPRTS QPARKKARAA NGKRQRREPE 240 EEEEVGGGRM AGLRELTQAI LRFGQVYERV ENSKLRQVLE IEKQRMEFTR ELELQRMEFL 300 MKTQMELSQL NNNHHHHGSN SRKKKRLDDA GARLGRTQVF RSVSLLVTRT TKSVVISVYI 360 LSLSCLRYIL FKCYELQYVM VIFSMTMMSL TIWVSVFRSK LAQL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391219.1 | 1e-161 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 6e-47 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | M0SC56 | 0.0 | M0SC56_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P05880_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2404 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G14180.1 | 3e-36 | sequence-specific DNA binding transcription factors |