PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P05800_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 30672.3 Da PI: 5.1512 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a ++k++g GSMUA_Achr3P05800_001 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARKIRG 165 69*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-22 | 116 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.131 | 116 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-33 | 116 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.74E-32 | 116 | 174 | No hit | No description |
SMART | SM00380 | 8.0E-38 | 116 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-12 | 117 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-12 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-12 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MVSALMCGGA IISDFIPTVR PERRVTADYL WRGLKRGGAN GVKTKKSNGH RRAVKDTEDD 60 FEADFQEFEY ESMVSEVEDE VEHVDTPFAL ASTVTLKPVE FNGPAARSAK KKRKNQYRGI 120 RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDAEA RKIRGKKAKV NFPDEAPTSI 180 KQSPAIEEPA INFYSDRGSN SFDCSKYGHE DSSAKLSEEL SAFESYMKFL QVPYLEGGSD 240 EPIESLLIND VTQDVNGVDL WSFDDLPPVA VSGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 115 | 175 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413995.1 | 1e-126 | PREDICTED: ethylene-responsive transcription factor 1-like isoform X2 | ||||
Swissprot | Q6K7E6 | 2e-53 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M0SC48 | 0.0 | M0SC48_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P05800_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 6e-37 | related to AP2 12 |