PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P05800_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 274aa    MW: 30672.3 Da    PI: 5.1512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P05800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19116165255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++g
  GSMUA_Achr3P05800_001 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARKIRG 165
                            69*******.**********954...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-22116175IPR016177DNA-binding domain
PROSITE profilePS5103224.131116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-33116175IPR001471AP2/ERF domain
CDDcd000182.74E-32116174No hitNo description
SMARTSM003808.0E-38116179IPR001471AP2/ERF domain
PfamPF008474.4E-12117165IPR001471AP2/ERF domain
PRINTSPR003676.6E-12117128IPR001471AP2/ERF domain
PRINTSPR003676.6E-12139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVSALMCGGA IISDFIPTVR PERRVTADYL WRGLKRGGAN GVKTKKSNGH RRAVKDTEDD  60
FEADFQEFEY ESMVSEVEDE VEHVDTPFAL ASTVTLKPVE FNGPAARSAK KKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDAEA RKIRGKKAKV NFPDEAPTSI  180
KQSPAIEEPA INFYSDRGSN SFDCSKYGHE DSSAKLSEEL SAFESYMKFL QVPYLEGGSD  240
EPIESLLIND VTQDVNGVDL WSFDDLPPVA VSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-211151751374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413995.11e-126PREDICTED: ethylene-responsive transcription factor 1-like isoform X2
SwissprotQ6K7E62e-53ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLM0SC480.0M0SC48_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P05800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.36e-37related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]