PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P05620_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 250aa MW: 27075.5 Da PI: 7.2523 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.2 | 8.4e-17 | 166 | 202 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ kg+ GSMUA_Achr3P05620_001 166 CHHCGINSksTPMMRRGPDGPRTLCNACGLMWANKGT 202 ****988888************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 4.6E-9 | 30 | 65 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 13.7 | 30 | 65 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.7E-11 | 33 | 64 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.334 | 91 | 133 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.6E-16 | 91 | 133 | IPR010402 | CCT domain |
SMART | SM00401 | 1.4E-11 | 160 | 218 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-12 | 164 | 214 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-15 | 165 | 207 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 166 | 193 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-14 | 166 | 202 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.53E-15 | 166 | 208 | No hit | No description |
PROSITE profile | PS50114 | 9.275 | 172 | 217 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEEAVDGEGV EGDAPADHGD LGNPHALVVP PVASNQLTLS FHREVYVFDS VSPEKVQAVL 60 LLLGGREIAT STASIESATN PLDKRLNFPH RVASLMRFKE KRKERNFDKK IRYAVRKEVA 120 LRMQRNRGQF TTSKSNPDVA TLGATNCEGT QCWGTIEGRP PSAALCHHCG INSKSTPMMR 180 RGPDGPRTLC NACGLMWANK GTLRDLSKNP SLLTQSDPLE GSEMNGASAP VAEELLPHAD 240 AANDHHSSSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390446.1 | 0.0 | PREDICTED: GATA transcription factor 20 | ||||
Swissprot | Q5Z4U5 | 1e-103 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | M0SC30 | 0.0 | M0SC30_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P05620_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-73 | ZIM-like 1 |