PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P05500_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25601.8 Da    PI: 9.6059
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P05500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.21e-181151343
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                           i n++ r+ tf kR++g++KK +ELS+LCd+++++ii++++
  GSMUA_Achr3P05500_001 11 IVNDTARKATFKKRKKGLMKKVSELSTLCDVKACMIIYGPD 51
                           789************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.984149IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-24160IPR002100Transcription factor, MADS-box
CDDcd002664.12E-18285No hitNo description
SuperFamilySSF554559.94E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MARKKVKLEW IVNDTARKAT FKKRKKGLMK KVSELSTLCD VKACMIIYGP DEPHADVWPS  60
VPDAMRVLAR LKRLPETEQS KKMMNQEALM RQRIRKLQEQ LQKQDKENRE LETALLMHQC  120
LSGRSLHDVA IEDVTALAWM TEMNMKKVRE RIEDAALKSA EKVKEEKPVA NDKGKTPMSA  180
AATEELPRQD WFAGAMDLSE LMISRNDDHK NTWLNTYYPM D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLEWIVNDTARKATFKKRK
22125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391093.11e-162PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM0SC181e-161M0SC18_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P05500_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-32AGAMOUS-like 80