PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P04260_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | CO-like | ||||||||
Protein Properties | Length: 420aa MW: 45280.6 Da PI: 4.9701 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.4 | 1.1e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ + +C+++ lC +C + H+ H++ GSMUA_Achr3P04260_001 4 LCDFCGEQRSIVYCRSDAASLCLSCDRNVHSAnalsqrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 26.8 | 1.1e-08 | 46 | 90 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C++++ +++ + C++ ++ lC++C ++H g H+++++ GSMUA_Achr3P04260_001 46 LLCDRCSAQPAVIRCTEESVSLCQNCDWNGHGGsavssgHKRETI 90 57*****************************66999999998775 PP | |||||||
3 | CCT | 65.8 | 1.2e-22 | 363 | 406 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+k RkFeKkirY+sRKa+A+ R+RvKGrFvk+ GSMUA_Achr3P04260_001 363 RVSAVMRYKEKKKARKFEKKIRYASRKAMADVRKRVKGRFVKAG 406 889**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.812 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.6E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.65E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.186 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-5 | 46 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.77E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.46 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.5E-17 | 363 | 405 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.517 | 363 | 405 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MSHLCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALSQ RHSRTLLCDR CSAQPAVIRC 60 TEESVSLCQN CDWNGHGGSA VSSGHKRETI NCYIGCPSAA EFSRIWSFFQ ELPQIAESNC 120 EQGLGLMTIN ESSVSNCWAS PENSTLDVSG GGKMEELGAV DKSSALIGSS SGSAMCPMPC 180 TADLTAGAVD LTTPKLSCPG TKDFEFCKDD IYEDLNMDDV DLTFQNYEEL FGVSHNETGH 240 LFDDDEIDIF FDTRATSAGN SNSQGELVGE ASSAGQVKPM QAMFSNAVSA DSVMSKPVKN 300 ADSSQFFPAR QACFSLSLSF SGLTGESSAG DYQDCGVSSV LLMGAPPVFG AGLENSSLPR 360 GSRVSAVMRY KEKKKARKFE KKIRYASRKA MADVRKRVKG RFVKAGEAYD YDPLAQTRSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390595.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
TrEMBL | M0SBP4 | 0.0 | M0SBP4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P04260_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 4e-96 | B-box type zinc finger protein with CCT domain |