PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P04260_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 420aa    MW: 45280.6 Da    PI: 4.9701
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P04260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06444539
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                            C+ ++e++ + +C+++   lC +C  + H+       H++
  GSMUA_Achr3P04260_001  4 LCDFCGEQRSIVYCRSDAASLCLSCDRNVHSAnalsqrHSR 44
                           7*****************************65677777765 PP

2zf-B_box26.81.1e-084690442
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                             C++++ +++ + C++ ++ lC++C  ++H g      H+++++
  GSMUA_Achr3P04260_001 46 LLCDRCSAQPAVIRCTEESVSLCQNCDWNGHGGsavssgHKRETI 90
                           57*****************************66999999998775 PP

3CCT65.81.2e-22363406144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R  a++RYkeK+k RkFeKkirY+sRKa+A+ R+RvKGrFvk+ 
  GSMUA_Achr3P04260_001 363 RVSAVMRYKEKKKARKFEKKIRYASRKAMADVRKRVKGRFVKAG 406
                            889**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
SMARTSM003369.6E-9147IPR000315B-box-type zinc finger
CDDcd000213.65E-7447No hitNo description
PROSITE profilePS501199.1864390IPR000315B-box-type zinc finger
PfamPF006432.5E-54689IPR000315B-box-type zinc finger
CDDcd000218.77E-54790No hitNo description
SMARTSM003360.464890IPR000315B-box-type zinc finger
PfamPF062032.5E-17363405IPR010402CCT domain
PROSITE profilePS5101715.517363405IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSHLCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALSQ RHSRTLLCDR CSAQPAVIRC  60
TEESVSLCQN CDWNGHGGSA VSSGHKRETI NCYIGCPSAA EFSRIWSFFQ ELPQIAESNC  120
EQGLGLMTIN ESSVSNCWAS PENSTLDVSG GGKMEELGAV DKSSALIGSS SGSAMCPMPC  180
TADLTAGAVD LTTPKLSCPG TKDFEFCKDD IYEDLNMDDV DLTFQNYEEL FGVSHNETGH  240
LFDDDEIDIF FDTRATSAGN SNSQGELVGE ASSAGQVKPM QAMFSNAVSA DSVMSKPVKN  300
ADSSQFFPAR QACFSLSLSF SGLTGESSAG DYQDCGVSSV LLMGAPPVFG AGLENSSLPR  360
GSRVSAVMRY KEKKKARKFE KKIRYASRKA MADVRKRVKG RFVKAGEAYD YDPLAQTRSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390595.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
TrEMBLM0SBP40.0M0SBP4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P04260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.14e-96B-box type zinc finger protein with CCT domain