PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P03540_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 402aa    MW: 43577.4 Da    PI: 7.309
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P03540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.36.6e-3559133266
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........s 66 
                            +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++          +
  GSMUA_Achr3P03540_001  59 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDQLAELpaawiptaavT 133
                            79*************************************************************966655444431 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-3259141IPR005333Transcription factor, TCP
PROSITE profilePS5136933.3561119IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGEHHSHHGS LGLHQLALHH HQQQQQREQR AQTHSRLGRL RAAGGEIVEV QGGHIVRSTG  60
RKDRHSKVCT AKGPRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLIK NAKAAIDQLA  120
ELPAAWIPTA AVTADAAATS TSFSMPDFPT AFSFGGPKGT GGSISFLPPS LDSDHIADTI  180
KSFFPMAAAG GTTISPSSIP SIGFHNYPSD LLSRTSGRTQ DLRLSLQSFQ DPIFHNAQSN  240
QQHHSPTPAH LSEWNVAETS GGAGLYGFAF NVPPLQAVPL HSVLGPSQFL TQRGPLQSSN  300
SPSVRGWADP VDPTSELHMQ PVLHPSAASI GFTSEADFSG FHVPARIQGE EEHGDICSSN  360
DHKFKDFNMN INCSNKSAIA KIRSPMYFLE SEGDTISDLK QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2166119154Putative transcription factor PCF6
5zkt_B8e-2166119154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390672.10.0PREDICTED: transcription factor PCF5-like
SwissprotQ8LT072e-81PCF5_ORYSJ; Transcription factor PCF5
TrEMBLM0SBH20.0M0SBH2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P03540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-76TCP family protein