PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P02360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 269aa    MW: 28416.3 Da    PI: 5.0564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P02360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-1878126355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  GSMUA_Achr3P02360_001  78 YLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARALRG 126
                            88******.**********843...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.66777134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-2977134IPR001471AP2/ERF domain
CDDcd000187.22E-3077135No hitNo description
SMARTSM003801.1E-3377140IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2178134IPR016177DNA-binding domain
PRINTSPR003671.4E-87889IPR001471AP2/ERF domain
PfamPF008471.3E-1078126IPR001471AP2/ERF domain
PRINTSPR003671.4E-8100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQTQPHTNIA ACCCLLFLSR MGFSFFFSTS SSSSSSSTPV SGTAQDKKSK RRQPQDNGDE  60
ANGSGGSNTT TEGGGMRYLG VRRRPWGRYA AEIRDPATKE RHWLGTFDTA EEAAVAYDRA  120
ARALRGPRAR TNFAYPDLPP GSSLTPFLSP DLQPPPCSFL VSTPPPVQAT LPDAEQGLQY  180
PASALPPLPQ SPPPAPEVAS PWDFGGATAG GEEHLAGLGE FGGYGSPASH GIFFEEGYVH  240
SPLFGPMPAV DDAAADGFQL GGSSSSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1875133362ATERF1
3gcc_A3e-1875133362ATERF1
5wx9_A6e-1864133371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7247162e-31KT724716.1 Triticum turgidum AP2/ERF transcription factor (NILbh-1) gene, NILbh-1-2AS allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390832.21e-161PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLM0SB540.0M0SB54_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P02360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-25ERF family protein