PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P01370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 124aa    MW: 14722 Da    PI: 10.6159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P01370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-18552148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd+ll+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr3P01370_001  5 RGPWTLEEDKLLIHYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 52
                           89*********************************************7 PP
2Myb_DNA-binding55.61.2e-1758101146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ ++eE++l++++++++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr3P01370_001  58 RGNLSPEEQLLILELHAKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 101
                            7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.838152IPR017930Myb domain
SuperFamilySSF466898.24E-32299IPR009057Homeodomain-like
SMARTSM007178.1E-15454IPR001005SANT/Myb domain
PfamPF002491.6E-16552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-23659IPR009057Homeodomain-like
CDDcd001677.55E-11752No hitNo description
PROSITE profilePS5129425.75753107IPR017930Myb domain
SMARTSM007171.7E-1557105IPR001005SANT/Myb domain
PfamPF002491.3E-1658101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-2560106IPR009057Homeodomain-like
CDDcd001672.88E-1162101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MELRRGPWTL EEDKLLIHYI ACHGEGRWNL LARCSGLKRT GKSCRLRWLN YLKPDVKRGN  60
LSPEEQLLIL ELHAKWGNRW SRIAQHLPGR TDNEIKNYWR TRVQKQARQL KPPITSSFHC  120
QIDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2621074108B-MYB
1h8a_C2e-26210724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390937.11e-76PREDICTED: myb-related protein 305-like
SwissprotQ9C9G72e-64MYB62_ARATH; Transcription factor MYB62
TrEMBLM0SAV53e-86M0SAV5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P01370_0014e-87(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.17e-67myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]