PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P00640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 298aa MW: 33491.3 Da PI: 4.7849 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.7 | 5.8e-15 | 118 | 161 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+ri+++++ Lr+++Pk +K++Ka+iL A+eY+k+Lq GSMUA_Achr3P00640_001 118 VAERKRRQRIRDRLHALRSMVPKI-----TKMDKASILGDAIEYVKELQ 161 68*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.38 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-18 | 114 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-17 | 117 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-17 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-12 | 118 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.64E-7 | 133 | 165 | No hit | No description |
CDD | cd04873 | 2.33E-5 | 223 | 286 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MANNNGDPDI TIAHDLRPWF PPQATAASPP TSPWNPFCGP KKGDSFLDAS TDETVAYLNS 60 LLTTADAEPS SQPSAEHDEE EPPKREARRQ RRPGLASGGS EDDEEQRPGK RHHSKNLVAE 120 RKRRQRIRDR LHALRSMVPK ITKMDKASIL GDAIEYVKEL QNQVRDLQDG LEKNEEEDEG 180 NVPVPNGMIN RGKEPMSDED DDEHQQMEPQ VEVKQLTANE LFLMVLCEHR QGGFARLMEA 240 MNALSLEVTN ASVTTSRTVV LNVFRVEKGN NNLVVRAEEV RDMLLETARG REEGQLQI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 124 | ERKRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391173.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Swissprot | Q9ZVX2 | 8e-52 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | M0SAN2 | 0.0 | M0SAN2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P00640_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5530 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 7e-54 | bHLH family protein |