PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P00560_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 279aa MW: 32175.3 Da PI: 5.0401

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P00560_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.2	2.1e-46	11	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPt+eel+++yL++ v+gkkl+l e+i+++++y+++Pw+Lp ++k +e+ewyf+++rd+++a+g r++r+t++g+Wkatg ++ GSMUA_Achr3P00560_001 11 PGFRFHPTEEELLDFYLRRMVQGKKLQL-EIISTINLYHYDPWELPGMAKIGEREWYFYVPRDRRQASGGRPSRTTERGFWKATGCER 97 9*************************.99***********888999******************************** PP NAM 91 evlsk..kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +v s+ ++l+g kktLv+y +grap+g+ktdWvm+eyrl GSMUA_Achr3P00560_001 98 PVRSAadPKRLIGYKKTLVYYhQGRAPRGSKTDWVMNEYRL 138 98777788*******778*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.409	9	154	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-53	10	154	IPR003441	NAC domain
Pfam	PF02365	7.5E-24	11	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MERSGLEMDL PGFRFHPTEE ELLDFYLRRM VQGKKLQLEI ISTINLYHYD PWELPGMAKI 60 GEREWYFYVP RDRRQASGGR PSRTTERGFW KATGCERPVR SAADPKRLIG YKKTLVYYHQ 120 GRAPRGSKTD WVMNEYRLPD PLLKDVVLCK VYRKPASMKE LEKRAAAMEG ETTMTVSQNS 180 GSTAESASGS YQERLLQESI TAVDDVIVIE DASDVVVVIG DEAEEEVDAS TASNRRPSLL 240 ELEVPKNREL EWLQDSFFTQ LTSPWPESWS PYYDTMLNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-45	7	154	12	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391178.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	4e-93	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M0SAM4	0.0	M0SAM4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P00560_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-85	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]