PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P00330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 1232aa    MW: 139219 Da    PI: 4.8772
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P00330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-5291421128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lp GfrFhPtdeelv++yLk+k++g+  ++ +vi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkat
  GSMUA_Achr3P00330_001   9 LPLGFRFHPTDEELVNHYLKRKITGRIKSEMQVIPEIDVCKCEPWDLPeKsLIRSNDPEWFFFAPKDRKYPNGHRSNRATEAGYWKAT 96 
                            699***********************999989***************95346667788****************************** PP

                    NAM  87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd+ + sk    k++ +g+kktLvf++grap+g++t+W+mheyr 
  GSMUA_Achr3P00330_001  97 GKDRVIRSKssaaKSTIIGMKKTLVFHRGRAPHGVRTNWIMHEYRT 142
                            ********977766777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-583163IPR003441NAC domain
PROSITE profilePS5100557.1729163IPR003441NAC domain
PfamPF023652.2E-2710141IPR003441NAC domain
PfamPF039856.2E-608331213IPR007133RNA polymerase II associated factor Paf1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006368Biological Processtranscription elongation from RNA polymerase II promoter
GO:0009910Biological Processnegative regulation of flower development
GO:0016571Biological Processhistone methylation
GO:0016593Cellular ComponentCdc73/Paf1 complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1232 aa     Download sequence    Send to blast
MAAIALASLP LGFRFHPTDE ELVNHYLKRK ITGRIKSEMQ VIPEIDVCKC EPWDLPEKSL  60
IRSNDPEWFF FAPKDRKYPN GHRSNRATEA GYWKATGKDR VIRSKSSAAK STIIGMKKTL  120
VFHRGRAPHG VRTNWIMHEY RTTELEFESG DQGGYVLYRL FKKPEERISS TNAEEMEVNG  180
FSPGDTQHDA DMTEETETQM NHDSPESDLQ EEPQSMPDSV QKQPADIEMW LTGKSDGSTR  240
VSVKPEMNCF NLDSPDEEAK AREKADPPQD AFAKFCDQEF AQIGHGVPNI SSQILPHSSY  300
PLLSDINEEL HIGLYPVDST VGDDLDAILN SILSVDDCSS GASIIPKEPF AESLPEHSPW  360
DSASHRDGES SSDIETEPSL LQHAADLETC EWCCGSSLLP TDSLQIDGSV VSPGATMQLS  420
TLYENASLLP YDISGPDVYS VDYGAESLQD LFNSLEELGS QNPISDCRDD LEGTGIQIRS  480
RQAQQYQPNS DNLLLKQGTA GRRLRLQSSI RKVQFGSASD ELSSTNDDRD KESTAEAKRE  540
LFYSMEEAIS EKNVTNRDDL MDSGIKIRAR QVQHSANKLS TQEVQTLSEF TRHNELQFGS  600
ISDGVSSIRS NFEDKVGRTE AGDHADDGIS ESEESRLPAF LDKLEDLSIH DADETSSKYQ  660
ESKSVLRSRR TSTNDSDNIP TYPSNRKAPR NQSSPLVPPD VGQRHQGARE ALPPGRQPKL  720
SLPPKQQKPP SAPPAGRASA QPGGPNGTSM RVETEEERRL RKRREYEKQK QEEKRQLLLK  780
QSQATVLQKT QMMVSGSARP HGSITGSRIA ERRTTPFLSG ERIENRLKKP TTFICKMKFR  840
NDLPDPTAQP KLLAMHKDKD RYTKYTITSL EKMHKPKLYV EQDLGVPLDL LDMSVYNPSA  900
VRTALSPEDE ELLLDDEVVT PIKQGGIRRK ERPTDKGVSW LVKTQYISPI SMEAAKMSLT  960
EKQAKEIRES KEGRNLFLEN LNNRDRQIQT IEESFRAAKL PPVHQTKPEL EAVDILPLLP  1020
DFDRCEDQFV MVNFDGDPTA DSEQYNKLDR SIRDELESQV IFFHMFSTNG SDPMNPEKFL  1080
AYMVPQPDEL YKDLKSENED TSYSWVREYH WDVRGDDADD PTTYFVTFGE KDARYLPLPT  1140
KLVLQKKKAK EGRSGDEIEQ FPVPSRVTVR KKSTTTYGEP NEYGEASRNN EKLDVRNIKR  1200
GRSSMDDDLE RQHKFQRTED IDQFSGEEDM SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-44816319168NAC domain-containing protein 19
3swm_B4e-44816319168NAC domain-containing protein 19
3swm_C4e-44816319168NAC domain-containing protein 19
3swm_D4e-44816319168NAC domain-containing protein 19
3swp_A4e-44816319168NAC domain-containing protein 19
3swp_B4e-44816319168NAC domain-containing protein 19
3swp_C4e-44816319168NAC domain-containing protein 19
3swp_D4e-44816319168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1757764RRLRKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391051.10.0PREDICTED: NAC domain-containing protein 14 isoform X1
RefseqXP_009391052.10.0PREDICTED: NAC domain-containing protein 14 isoform X1
RefseqXP_018679623.10.0PREDICTED: NAC domain-containing protein 14 isoform X1
TrEMBLM0SAK10.0M0SAK1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P00330_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-76NAC transcription factor-like 9