PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P23010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 291aa MW: 32085.8 Da PI: 6.3188 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.1 | 1e-28 | 97 | 148 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eCl+NhAaslGgh +DGC+Efmp + +alkCaACgCHR+FHRr+++ GSMUA_Achr2P23010_001 97 ALRYRECLRNHAASLGGHILDGCCEFMPR-----SDDALKCAACGCHRSFHRRDTDM 148 679*************************9.....4579***************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-24 | 98 | 146 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-23 | 99 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-16 | 99 | 147 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.397 | 100 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 197 | 264 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.18E-19 | 200 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.7E-28 | 202 | 259 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MEVRGQELQE QEKIYNPTPL QQSAAFTMPL PSSTLLHYAT EARGGTGDAR NGMASLIHNP 60 TPTSAPALAS ALGSGGRSNS TTAAATALLP ATDTDAALRY RECLRNHAAS LGGHILDGCC 120 EFMPRSDDAL KCAACGCHRS FHRRDTDMNS PLRDLQNATH GRLFGSAGIL LHTGASVGAA 180 TESSTEELML GAVPQQRFTV SKKRFRTKFT AEQKERMMAF AEKVGWRMQK QHEAAVEQFC 240 GEVGVSRQVL KVWMHNNKNA LRKQQQQEEE EEEEEEEVEE QQQHHHEMPE A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-27 | 203 | 260 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390407.2 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9SB61 | 4e-53 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | M0SAE2 | 0.0 | M0SAE2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P23010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-54 | homeobox protein 22 |
Publications ? help Back to Top | |||
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