PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P23000_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 84aa    MW: 9505.66 Da    PI: 10.1003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P23000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-091259246
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                            +WT++  +l+ +a + + ++   +W  +ar +g g+t++++k ++  
  GSMUA_Achr2P23000_001 12 SSWTPQQNKLFERALAVYDKDtpdRWLNVARAVGGGKTAEEVKKHYEL 59
                           58********************************************76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.261965IPR017884SANT domain
SMARTSM007179.5E-81063IPR001005SANT/Myb domain
SuperFamilySSF466897.26E-131269IPR009057Homeodomain-like
PfamPF002491.1E-61259IPR001005SANT/Myb domain
CDDcd001675.02E-61361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASGSLPRSS TSSWTPQQNK LFERALAVYD KDTPDRWLNV ARAVGGGKTA EEVKKHYELL  60
LEDLHRIESG RVPYPNYKSS GTRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-32881577RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390408.18e-57PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1736e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0SAE12e-55M0SAE1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P23000_0013e-56(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-37RAD-like 6