PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P22480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 324aa    MW: 35676 Da    PI: 5.7471
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P22480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.38.9e-41942242133
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg. 88 
                            a  k rhski T+ g+RdRR+Rls+++a+ fF Lqd LGfdk+skt++WLl+ +k+ai el  +ss  +s c++ s +s++s    + 
  GSMUA_Achr2P22480_001  94 ALSKCRHSKIVTANGPRDRRMRLSIDVARSFFRLQDTLGFDKASKTVQWLLTVSKAAIEELGTLSSAEHSGCSNRSPKSESS----Al 177
                            56789***********************************************************999999993333333333....23 PP

                    TCP  89 ..kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                              + +++   + k++++ + +++la+esrakarara+ertrek+r++
  GSMUA_Achr2P22480_001 178 vcQDSSAISRGVKPTRKVEYHSALARESRAKARARAKERTREKQRMT 224
                            4333333337788888888899**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-3696223IPR005333Transcription factor, TCP
PROSITE profilePS5136930.63396154IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.6203220IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLPIRDPEYI FDQSLNEQLE FNPPHLLLPN SSCFPSSTPT IFCPDAFRDL FLASSNIGIA  60
NAAPTSTRPS LPLGDSATSV ERQEGDDSCS RKRALSKCRH SKIVTANGPR DRRMRLSIDV  120
ARSFFRLQDT LGFDKASKTV QWLLTVSKAA IEELGTLSSA EHSGCSNRSP KSESSALVCQ  180
DSSAISRGVK PTRKVEYHSA LARESRAKAR ARAKERTREK QRMTSLDIIK EETSLNNMNS  240
LMEFANIEED ESCAPNWCLN VASDTAAAYE VPMIGGPVLI PVFENSQYTT AINHAGGIFE  300
EQWDVDALSL YSTSLVASDS YPNL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7751201e-102HM775120.1 Strelitzia reginae voucher UC:MB0607 teosinte branched1-like TCP transcription factor (TBL1b) gene, partial cds.
GenBankHM7751421e-102HM775142.1 Musa basjoo voucher UCBG:89.0873 teosinte branched1-like TCP transcription factor (TBL1b) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390421.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLM0SA890.0M0SA89_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P22480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-22TCP domain protein 12