PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P21640_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 332aa MW: 37435.2 Da PI: 5.3952

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P21640_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.5	6.6e-36	16	107	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k y++++d+++++++sws++++sfv++d++ f++++LpkyFkhsn++SFvRQLn+YgF+kv+ ++ weF+++ F +g GSMUA_Achr2P21640_001 16 FLTKCYDMVDDPSTDDTVSWSKTSDSFVIWDPHAFSQDLLPKYFKHSNLSSFVRQLNTYGFHKVDPDR---------WEFANEGFLRG 94 9**************************************************************999.........******* PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +k+ll++i r+k GSMUA_Achr2P21640_001 95 QKHLLKTIARRKP 107 ********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.8E-57	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.63E-34	13	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.2E-38	14	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.6E-32	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.2E-19	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.2E-19	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.2E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MASGGGSSLV PVLPPFLTKC YDMVDDPSTD DTVSWSKTSD SFVIWDPHAF SQDLLPKYFK 60 HSNLSSFVRQ LNTYGFHKVD PDRWEFANEG FLRGQKHLLK TIARRKPAHN NIVPPPQQPH 120 RKTESVNGII EELIKVRQHQ QNSELELHSL VRRIRCMEQK QLEMMSLLAM VVQTPNFIAQ 180 LVQQNVNDRW SNINKRRRQL PPPEHNVLEG AEAVSDGQMI KYQPFAPEIM KSSFLPVANS 240 KESGSVFNDL HSNGVSMTVG DDLALPLQEN GSLTNLEDLE QLLASSAGEN SEQIEPGALA 300 EYMRSLDFTE QETDGYMGNL TSEKGSNNMV VW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-24	13	105	26	129	Heat shock factor protein 1
5d5v_B	1e-24	13	105	26	129	Heat shock factor protein 1
5d5v_D	1e-24	13	105	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390349.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	9e-76	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	M0SA05	0.0	M0SA05_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P21640_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11494	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	5e-70	heat shock transcription factor A1D

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]