PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P21050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 261aa    MW: 29330.4 Da    PI: 10.8261
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P21050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.72.4e-39341872133
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec.. 73 
                            a +k rhski T+ g+RdRR+Rls+++a+ fF Lqd   fdk+skt++WLl+ +k+ai el  +              s      +  
  GSMUA_Achr2P21050_001  34 ALRKCRHSKIVTANGPRDRRMRLSIDVARSFFRLQDTFDFDKASKTVQWLLTVSKAAIEELGTLssaehsgcsnrspkSE-----Ssa 116
                            7899*********************************************************9994444444443322211.....112 PP

                    TCP  74 ...eaesssssasnsssg............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                               +++s  ss++    +            k++k+ + + k++++ + +++la+esrakarararertrek+r++
  GSMUA_Achr2P21050_001 117 lvcQDSSAISSSK----NksstvtaaarevKKSKARKGGVKPSRKVEYHSALARESRAKARARARERTREKQRMT 187
                            2223333333333....14456999999988888888899999999999***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.1153694IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-3936186IPR005333Transcription factor, TCP
PROSITE profilePS5137012.191166183IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MWLQHLLGQA FLLVIQPHRW RGRKATTVGS RKRALRKCRH SKIVTANGPR DRRMRLSIDV  60
ARSFFRLQDT FDFDKASKTV QWLLTVSKAA IEELGTLSSA EHSGCSNRSP KSESSALVCQ  120
DSSAISSSKN KSSTVTAAAR EVKKSKARKG GVKPSRKVEY HSALARESRA KARARARERT  180
REKQRMTSLD IIKEETSLNN MNSLMEFANI EEDESCAPNW CLNVASDTAA AYQVPVIPVF  240
ENSGNEIMDS DLFVPWIRFR G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7751201e-121HM775120.1 Strelitzia reginae voucher UC:MB0607 teosinte branched1-like TCP transcription factor (TBL1b) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390440.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLM0S9U60.0M0S9U6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-21TCP domain protein 12