PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P20220_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 579aa    MW: 62534.1 Da    PI: 7.0407
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P20220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.53.2e-17192280186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +W++  +  L++a++e+  +l+rg+l++ +We+v+  +     ++++ +s +qCk+k++nl+kryk + ++ +++     s++p+f++
  GSMUA_Achr2P20220_001 192 EWSDTAISSLLDAYTEKYVQLNRGNLRGRDWEDVATIVsercNKQKVGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLPASHWPWFKK 278
                            5********************************98777665599999********************99999999.455569****** PP

               trihelix  85 le 86 
                            +e
  GSMUA_Achr2P20220_001 279 ME 280
                            *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-21190282No hitNo description
Gene3DG3DSA:3.40.1160.108.9E-62328572IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536335.63E-49337572IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042545.68E-95340573No hitNo description
PfamPF006966.7E-19340552IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAYCDDDFSL LGDEARSQPQ PQPGPFSAAQ RYLPSKPAPI SLQPRPHHHL AAAVAAIDNP  60
GKNGVVVDGG SDDHDGYGEA FGQTNTSKCP TAPGFHDQHC FADDDNPFAP QNPAADDEGG  120
DDDGDPDNYP ERKGAIVTAS QHQQPHHRLP KRKDRDDLSD SESPYCYNSS GAANKKSRPM  180
SSSGDYRKDR EEWSDTAISS LLDAYTEKYV QLNRGNLRGR DWEDVATIVS ERCNKQKVGK  240
SVEQCKNKID NLKKRYKVEC QRLSSGGLPA SHWPWFKKME QLVGSSSSSS KAGPDDDKSI  300
TLGGSAAVMR QIKRYPLAAS GPVIVNTNSK MKALSNPRWK RVILKISGVA LAGAGPQNVD  360
HKVVMLIAKE IAIANRAGVE VAIVVGGQNF FCGDTWIAAT GIDRATTYQI GMMASLMNAI  420
MLQALLENLG VEARIQSTLL TQEIAEPYIR RRAIRHLEKG RVVIFGGAGG GTGNQLFSSD  480
IAAALRASEI HADAVLKGTT ADGFYGCHSS NSNSNAFEHI SFRELVSRGF TAINMAALKL  540
CEENNTPVVL FNLLEPGIVS RALCGEPVGT LIDQSGRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-563335723239Uridylate kinase
3ek5_B4e-563335723239Uridylate kinase
3ek5_C4e-563335723239Uridylate kinase
3ek5_D4e-563335723239Uridylate kinase
3ek5_E4e-563335723239Uridylate kinase
3ek5_F4e-563335723239Uridylate kinase
3ek6_A4e-563335723239Uridylate kinase
3ek6_B4e-563335723239Uridylate kinase
3ek6_C4e-563335723239Uridylate kinase
3ek6_D4e-563335723239Uridylate kinase
3ek6_E4e-563335723239Uridylate kinase
3ek6_F4e-563335723239Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390011.10.0PREDICTED: uncharacterized protein LOC103976510
TrEMBLM0S9L30.0M0S9L3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P20220_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-177Trihelix family protein