PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P20130_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 1228aa MW: 134382 Da PI: 6.7835

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P20130_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.2e-30	985	1043	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+ GSMUA_Achr2P20130_001 985 TDGCQWRKYGQKIAKGNPCPRAYYRCTMAtGCPVRKQVQRCADDRSILITTYEGTHNHP 1043 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54928	2.16E-31	191	354	IPR012677	Nucleotide-binding alpha-beta plait domain
Gene3D	G3DSA:3.30.70.330	1.9E-18	192	278	IPR012677	Nucleotide-binding alpha-beta plait domain
CDD	cd12524	7.64E-49	193	269	No hit	No description
PROSITE profile	PS50102	14.061	194	267	IPR000504	RNA recognition motif domain
SMART	SM00360	1.2E-12	195	263	IPR000504	RNA recognition motif domain
Pfam	PF00076	2.3E-10	196	260	IPR000504	RNA recognition motif domain
CDD	cd12529	1.13E-42	278	348	No hit	No description
PROSITE profile	PS50102	14.334	279	352	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:3.30.70.330	8.0E-17	280	359	IPR012677	Nucleotide-binding alpha-beta plait domain
SMART	SM00360	3.0E-14	280	348	IPR000504	RNA recognition motif domain
Pfam	PF00076	4.3E-12	281	346	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:3.30.70.330	3.5E-7	524	597	IPR012677	Nucleotide-binding alpha-beta plait domain
Pfam	PF04059	2.3E-53	527	623	IPR007201	RNA recognition motif 2
SuperFamily	SSF54928	1.17E-15	529	613	IPR012677	Nucleotide-binding alpha-beta plait domain
SMART	SM00360	0.087	529	605	IPR000504	RNA recognition motif domain
CDD	cd12531	2.12E-59	530	615	No hit	No description
Gene3D	G3DSA:1.20.1250.10	8.7E-4	825	896	IPR012351	Four-helical cytokine, core
Gene3D	G3DSA:2.20.25.80	2.4E-32	969	1045	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-27	977	1045	IPR003657	WRKY domain
PROSITE profile	PS50811	29.31	979	1045	IPR003657	WRKY domain
SMART	SM00774	3.2E-36	984	1044	IPR003657	WRKY domain
Pfam	PF03106	8.7E-27	986	1043	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0000166	Molecular Function	nucleotide binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1228 aa Download sequence Send to blast
MDLTLRNSVP IRSLNTDSVN TLEKVDNAPE IPSGSDVLYG SNDVGLFSSS LPVLRHEKLN 60 FSDTLGGVHS TVDASSKLKK LSKDVEGKVR VDDFKLQGMG LLLPDDEEAL LSGIMDDFDL 120 SGLPGKVDEL EDYDLFGNLG GMELDSDPTE SITVGMAKAS MSDGFLGNGI GQYSLPNSVG 180 AVSGEHPYGE HPSRTLFVRN INSNVEDSEL QLLFEQYGEI RSLYTACKHR GFVMISYYDI 240 RSARTAMRAL QNKPLRRRKL DIHFSIPKDN PSDKDMNQGT LVIFNLDPSV SNDDLRQIFG 300 AYGEVKEIRE TPHKQHHKFI EFFDVRAAEA ALRSLNKSDI AGKRIKLEPS RPGGARRNLM 360 QHLTHELEQD ETRVYLHHGG SPINNSPPGP WAHFSSPNDN IPLQVFSHHG SFLRSSHNQN 420 PHHVGSAPSV VPFQRQYGYF PESAEPSFMN QFALGNIGFN RKGGTGLMNM TPHPTLNQGI 480 ISGSISIGID GLVDWHRSRR VDNHGSQADK QQYQLDLDKI IKGEDTRTTI MIKNIPNKYT 540 SKMLLAAIDE THSGTYDFLY LPIDFKNKCN VGYAFINMSS PSHVVSFYKA FNGKKWEKFN 600 SEKVASLAYA RIQGRSALVA HFQNSSLMNE DKRCRPILFD PEGADTGNEE LFPSSSLHIQ 660 QEDGAVSVGV SPESPQGSSP SGKSEKSTLP GTVHFMTQSY MDNSGGIGVL TLDTSAPLFL 720 ASSLSYGGGG ILKRKQPMDS GGHHGGAGTI EFPFSLNPRR DAETANEALT SKRVVADEVD 780 FFSDEKKKQK KKDTIAASPV ETDLDLKVPS LGIKKEDLTI QVGDYSTFER LHVHLRSMQA 840 ELARMNEENQ KLRGMLSQVN SSYSALQMQL ATLMQQRNRT PQAHEEKIDA ENGDQGGARV 900 LRQFLDLGPD ADVDEHSNSS TASLERSSST PENVEVGSMG YGLHKNEGNP REALELTPTA 960 TAEQESTMRR TRVSVRARSE APTITDGCQW RKYGQKIAKG NPCPRAYYRC TMATGCPVRK 1020 QVQRCADDRS ILITTYEGTH NHPLPPAAMA MASATSAAAS TLFSGSTVAT ISASAPFPTV 1080 TLDLTRSPDP LQSLRTPAGQ FQFPFPALGA LPQPPSLPPV FGQTLLNQSR FSGLQETVNA 1140 ATAAITADPN FTAVLAAAIK SIIGGNDQAV NSSQNDNKSN HVIDKCTPTF VTPSCSFISP 1200 TPIGSRRTSD GRRYHASSLE GQRLRPCT

Sequence ? help Back to Top

Protein Sequence Length: 1228 aa Download sequence Send to blast

MDLTLRNSVP IRSLNTDSVN TLEKVDNAPE IPSGSDVLYG SNDVGLFSSS LPVLRHEKLN  60
FSDTLGGVHS TVDASSKLKK LSKDVEGKVR VDDFKLQGMG LLLPDDEEAL LSGIMDDFDL  120
SGLPGKVDEL EDYDLFGNLG GMELDSDPTE SITVGMAKAS MSDGFLGNGI GQYSLPNSVG  180
AVSGEHPYGE HPSRTLFVRN INSNVEDSEL QLLFEQYGEI RSLYTACKHR GFVMISYYDI  240
RSARTAMRAL QNKPLRRRKL DIHFSIPKDN PSDKDMNQGT LVIFNLDPSV SNDDLRQIFG  300
AYGEVKEIRE TPHKQHHKFI EFFDVRAAEA ALRSLNKSDI AGKRIKLEPS RPGGARRNLM  360
QHLTHELEQD ETRVYLHHGG SPINNSPPGP WAHFSSPNDN IPLQVFSHHG SFLRSSHNQN  420
PHHVGSAPSV VPFQRQYGYF PESAEPSFMN QFALGNIGFN RKGGTGLMNM TPHPTLNQGI  480
ISGSISIGID GLVDWHRSRR VDNHGSQADK QQYQLDLDKI IKGEDTRTTI MIKNIPNKYT  540
SKMLLAAIDE THSGTYDFLY LPIDFKNKCN VGYAFINMSS PSHVVSFYKA FNGKKWEKFN  600
SEKVASLAYA RIQGRSALVA HFQNSSLMNE DKRCRPILFD PEGADTGNEE LFPSSSLHIQ  660
QEDGAVSVGV SPESPQGSSP SGKSEKSTLP GTVHFMTQSY MDNSGGIGVL TLDTSAPLFL  720
ASSLSYGGGG ILKRKQPMDS GGHHGGAGTI EFPFSLNPRR DAETANEALT SKRVVADEVD  780
FFSDEKKKQK KKDTIAASPV ETDLDLKVPS LGIKKEDLTI QVGDYSTFER LHVHLRSMQA  840
ELARMNEENQ KLRGMLSQVN SSYSALQMQL ATLMQQRNRT PQAHEEKIDA ENGDQGGARV  900
LRQFLDLGPD ADVDEHSNSS TASLERSSST PENVEVGSMG YGLHKNEGNP REALELTPTA  960
TAEQESTMRR TRVSVRARSE APTITDGCQW RKYGQKIAKG NPCPRAYYRC TMATGCPVRK  1020
QVQRCADDRS ILITTYEGTH NHPLPPAAMA MASATSAAAS TLFSGSTVAT ISASAPFPTV  1080
TLDLTRSPDP LQSLRTPAGQ FQFPFPALGA LPQPPSLPPV FGQTLLNQSR FSGLQETVNA  1140
ATAAITADPN FTAVLAAAIK SIIGGNDQAV NSSQNDNKSN HVIDKCTPTF VTPSCSFISP  1200
TPIGSRRTSD GRRYHASSLE GQRLRPCT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	971	1047	1	76	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	258	KPLRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable RNA-binding protein that may play a role in growth regulation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q6ZI17	1e-162	OML2_ORYSJ; Protein MEI2-like 2
TrEMBL	M0S9K4	0.0	M0S9K4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P20130_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	4e-80	WRKY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Anderson GH, et al. Diversification of genes encoding mei2 -like RNA binding proteins in plants. Plant Mol. Biol., 2004. 54(5): p. 653-70 [PMID:15356386] Kawakatsu T, et al. PLASTOCHRON2 regulates leaf initiation and maturation in rice. Plant Cell, 2006. 18(3): p. 612-25 [PMID:16461585]