PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P20020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 284aa MW: 32607.2 Da PI: 7.5289 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.6 | 2.8e-54 | 21 | 150 | 2 | 129 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi++vdi+k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkat GSMUA_Achr2P20020_001 21 PPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIRDVDINKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKAT 107 9****************************.9***************952444443456****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrle GSMUA_Achr2P20020_001 108 GRDKAIHLSSSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 150 *****************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-60 | 10 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.27 | 20 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-28 | 21 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MRDVCFALAS MMPSNGQLSI PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIRDVDINKL 60 EPWDLKEKCR IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSSSKR 120 IGMRKTLVFY TGRAPHGQKT DWIMHEYRLE DRNPDIQEDG WVVCRVFKKK NYQRGIPPEA 180 VMEEDHSEAT ISPFVPPLSI NSLDLECSQN LMKLTTGGGA LLPQDRFPGD WSILDKLLAS 240 HQDLDQLFQS KCNPPSQLLD MATSVHRNPF QYLGCEADLL KFSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-52 | 17 | 171 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-52 | 17 | 171 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-52 | 17 | 171 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-52 | 17 | 171 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-52 | 17 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-52 | 17 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-52 | 17 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-52 | 17 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-52 | 17 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-52 | 17 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-52 | 17 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-52 | 17 | 171 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-52 | 17 | 171 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-52 | 17 | 171 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389980.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like | ||||
Refseq | XP_009389981.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like | ||||
Swissprot | Q5Z6B6 | 1e-109 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | M0S9J3 | 0.0 | M0S9J3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P20020_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 2e-96 | NAC family protein |
Publications ? help Back to Top | |||
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