PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P20020_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 284aa    MW: 32607.2 Da    PI: 7.5289
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P20020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.62.8e-54211502129
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                            ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi++vdi+k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkat
  GSMUA_Achr2P20020_001  21 PPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIRDVDINKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKAT 107
                            9****************************.9***************952444443456****************************** PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            g+dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrle
  GSMUA_Achr2P20020_001 108 GRDKAIHLSSSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 150
                            *****************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6010169IPR003441NAC domain
PROSITE profilePS5100558.2720169IPR003441NAC domain
PfamPF023652.6E-2821149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRDVCFALAS MMPSNGQLSI PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIRDVDINKL  60
EPWDLKEKCR IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSSSKR  120
IGMRKTLVFY TGRAPHGQKT DWIMHEYRLE DRNPDIQEDG WVVCRVFKKK NYQRGIPPEA  180
VMEEDHSEAT ISPFVPPLSI NSLDLECSQN LMKLTTGGGA LLPQDRFPGD WSILDKLLAS  240
HQDLDQLFQS KCNPPSQLLD MATSVHRNPF QYLGCEADLL KFSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521717114167NO APICAL MERISTEM PROTEIN
1ut4_B4e-521717114167NO APICAL MERISTEM PROTEIN
1ut7_A4e-521717114167NO APICAL MERISTEM PROTEIN
1ut7_B4e-521717114167NO APICAL MERISTEM PROTEIN
3swm_A4e-521717117170NAC domain-containing protein 19
3swm_B4e-521717117170NAC domain-containing protein 19
3swm_C4e-521717117170NAC domain-containing protein 19
3swm_D4e-521717117170NAC domain-containing protein 19
3swp_A4e-521717117170NAC domain-containing protein 19
3swp_B4e-521717117170NAC domain-containing protein 19
3swp_C4e-521717117170NAC domain-containing protein 19
3swp_D4e-521717117170NAC domain-containing protein 19
4dul_A4e-521717114167NAC domain-containing protein 19
4dul_B4e-521717114167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389980.10.0PREDICTED: NAC domain-containing protein 76-like
RefseqXP_009389981.10.0PREDICTED: NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-109NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLM0S9J30.0M0S9J3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P20020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-96NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]