PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P19890_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 792aa MW: 87617.9 Da PI: 4.905 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.3e-19 | 47 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l++av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l GSMUA_Achr2P19890_001 47 KGQWTAEEDAILYKAVERFKGKNWKKIAECFP-DRTDVQCLHRWQKVL 93 799*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.4 | 1.9e-19 | 99 | 145 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ vk++G++ W+tIa+ ++ gR +kqc++rw+++l GSMUA_Achr2P19890_001 99 KGPWSKEEDEIIIEMVKKFGPKKWSTIAQALP-GRIGKQCRERWHNHL 145 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.2 | 2.5e-15 | 151 | 193 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ GSMUA_Achr2P19890_001 151 KEPWTQEEEIALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 193 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.731 | 42 | 93 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-16 | 43 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-16 | 46 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 47 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 49 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-14 | 50 | 93 | No hit | No description |
PROSITE profile | PS51294 | 32.517 | 94 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-32 | 96 | 192 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-18 | 98 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.64E-16 | 101 | 145 | No hit | No description |
Pfam | PF13921 | 4.0E-19 | 102 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-27 | 110 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-15 | 150 | 198 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.668 | 150 | 200 | IPR017930 | Myb domain |
CDD | cd00167 | 1.31E-11 | 153 | 193 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 154 | 201 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MASDKGKNSV KGEASSSNAA HEGIGQEIQK QRSLNGRTTG PTRRSTKGQW TAEEDAILYK 60 AVERFKGKNW KKIAECFPDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IEMVKKFGPK 120 KWSTIAQALP GRIGKQCRER WHNHLNPSIN KEPWTQEEEI ALIHAHQIYG NKWAELTKFL 180 PGRTDNAIKN HWNSSVKKKL NSYLASGLLS QFKGLPNVES PTQVGNMQKN NDHGLKDRLE 240 VEDSSECSQA STANVGWYQS DGELPNTVSV DDDIKLDGDS NRKEIQDSQL SMCTNEYYAS 300 MEEFARAVPE VQCEASTSAN LLPEEMSEKV SDRMILDELP NDSSLEVSQK SFELTEASEH 360 YSLCTRNNEN ASVLWSKFLD LKVPTFILNN DSRYEKQNNL LACETDCCNN NLYGLDYFSG 420 INCQNSFGSE AGGSLGSCSN PIYPVSSSAV PGISYCNNLM AVVPPSYLCP SDEKLQRNST 480 HETREIFVGA HDSEVITCSY DGFAYSSCSS LCPNDSSIPN VCLLEDKGQE IGTPKHTHTE 540 MMVSGTPDAN HNITLSDGNP TQPAELQDSG ALFYEPPRFP SLEIPFVSCD LIPSVDLQQA 600 YSPLGIRQLM MSSVSCSKPY SLWDSPSHDE SPDALLKSAA KSFMCTPSIM KKRQRELSSP 660 MVEQRIDKKP GIEMPCGSLH SSPLSNTENS SMVNLNGAVV LNEISSGYAE GGFTSSDNQQ 720 KEPVLLDEDK ENLCQSSGCA TNGNINKEVK SSTDLSDKMT SSTVTISVAA KSDAGSSRRR 780 FMWLIDLIMI MT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-68 | 47 | 200 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-68 | 47 | 200 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389967.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like isoform X1 | ||||
Refseq | XP_018678213.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like isoform X2 | ||||
TrEMBL | M0S9I0 | 0.0 | M0S9I0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P19890_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-157 | Homeodomain-like protein |